Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0296 ATGGCTTTTCATCAAGGTGCAGATGTGCATTACTTCGTAGAGGAGCCTGGTTTTGGGAGTGGTGCACAAGGTGCCATTAATCTAAGATGTCCTTCAGAACCGGCTCAGCACATGAACACTGGCCAGTTAGTTTTTACCTACGAAAAGATCGCGGAGATCACAAACGGTTTTGCTAGCGAAAACATAATAGGGGAGGGGGGATTTGGGTATGTTTACAAGGCTTCCATGCCTGATGGTAGAGTGGGGGCACTTAAGATGTTGAAGGCTGGTAGTGGCCAGGGAGAAAGGGAGTTTAGGGCTGAGGTGGACATCATCAGCCGAATCCATCATCGGCATTTGGTGTCATTGATTGGTTATTGCATATCTGAACAGCAAAGAGTGCTTATCTATGAGTTCGTTCCTAATGGGAATCTCAGTCAGCACTTGCATGGAAGTGAACGGCCAATTTTGGATTGGCCAAAGAGGATGAAGATAGCAATTGGCTCTGCAAGGGGCCTGGCATATCTCCATGATGGCTGCAACCCAAAGATTATTCACAGAGATATTAAATCAGCAAACATACTTTTGGACAATGCTTATGAGGCACAGGTTGCAGACTTTGGACTTGCCAGGCTAACCGATGATTCGAATACCCACGTATCGACTAGGGTGATGGGGACCTTTGGGTACATGGCTCCAGAGTATGCAACAAGTGGAAAATTAACAGATAGATCAGATGTTTTCTCTTTTGGAGTTGTCCTTCTTGAGCTTATAACTGGAAGGAAACCTGTTGATCCAATGCAGCCCATAGGAGAGGAGAGTTTGGTTGAGTGGGCTCGTCCACTTCTCCTTCGTGCAGTTGAGACAGGTGACTTTGGTGAACTAGTAGACCCCAGGCTTGAACGGCAATATGCGGACACTGAAATGTTCAGAATGATTGAGACAGCTGCAGCATGTGTTCGTCATTCTGCTCCAAAACGACCTCGTATGGTTCAGGTGGCTAGATCCTTAGATAGTGGTGATCAACAATATGATCTATCTAATGGGGTGAAATATGGTCAGAGCACTATTTATGATTCTGGCCAGTATAATGAAGACATTACGATATTCAAAAGGATGGTTAATGGCAGCTTTGATGATTCTGAGTTTGATATGGACAGCACGACGGATTACCGTTCAACTGTTTCAAGAGAAATGTCTGGATCCAGACATGCAAGGATGTTATATAGTGAAGGTGGTGATTCAGATTATAGAGTTTTCCACGGCCAACGGAGCAATACGCAGAACATGTCTTGA 1275 0.4502 MAFHQGADVHYFVEEPGFGSGAQGAINLRCPSEPAQHMNTGQLVFTYEKIAEITNGFASENIIGEGGFGYVYKASMPDGRVGALKMLKAGSGQGEREFRAEVDIISRIHHRHLVSLIGYCISEQQRVLIYEFVPNGNLSQHLHGSERPILDWPKRMKIAIGSARGLAYLHDGCNPKIIHRDIKSANILLDNAYEAQVADFGLARLTDDSNTHVSTRVMGTFGYMAPEYATSGKLTDRSDVFSFGVVLLELITGRKPVDPMQPIGEESLVEWARPLLLRAVETGDFGELVDPRLERQYADTEMFRMIETAAACVRHSAPKRPRMVQVARSLDSGDQQYDLSNGVKYGQSTIYDSGQYNEDITIFKRMVNGSFDDSEFDMDSTTDYRSTVSREMSGSRHARMLYSEGGDSDYRVFHGQRSNTQNMS* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0296 424 Gene3D Transferase(Phosphotransferase) domain 1 133 350 - -
Gso2g0296 424 SUPERFAMILY Protein kinase-like (PK-like) 37 330 IPR011009 -
Gso2g0296 424 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 5 424 - -
Gso2g0296 424 CDD STKc_IRAK 63 331 - -
Gso2g0296 424 Gene3D Phosphorylase Kinase; domain 1 26 132 - -
Gso2g0296 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 177 189 IPR008271 GO:0004672|GO:0006468
Gso2g0296 424 SMART serkin_6 57 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso2g0296 424 PANTHER RECEPTOR-LIKE KINASE 5 424 - -
Gso2g0296 424 Pfam Protein tyrosine and serine/threonine kinase 60 327 IPR001245 GO:0004672|GO:0006468
Gso2g0296 424 ProSiteProfiles Protein kinase domain profile. 57 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0296 Gso-Chr2 3194048 3198006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0296 18 393 Trihelix Transcription Factor Family AT1G70460 66.844 1.25e-180 519
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Gso2g0296 PK_Tyr_Ser-Thr 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0296 - - gsj:114369572 857.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0296 2 3194048 3198006 Gso2g0296 2 3194048 3198006 ECH
Gso1g0268 1 3186378 3190076 Gso2g0296 2 3194048 3198006 GST