Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0284 ATGAAAACAAAACAAAACATAGATAGTAGAATCCAAAACACTAAACTCCAACACGTACCTTTTTCCATGATCCGAAACACAAACAGGTCGGATCGCCGGGTACTAACCTCCCCGGTGGTTCACCCATGCGATAACATCGCTCTCTCTACCCTTCTCCCTTCCCTCATCACTCTCTCCAACGCCATTTCCAATTTCCAACACAGTTCCTTCCCTTGCAACAAGCGAAACGCGAGAATCGCGATTCGCTTGACCCGGCTTCTCCAACCCTTCCTTCACGAGATCCGAGACCATCATTCGGGTCTTGCAGACCCGGCAACCCTGAGCCTCTCGGAGCTTCATTTAACCTTCCAGAAGCTTCTTTTCCTTCTTGAAGATCTCACACGTAAAGGTGCCAAGCTTTACATGTTAATGGAATCGGATCGAGTCGCAACTCAGTTTCGGGTCATATCCAGATCCGTGGCCACAGCTTTGGACGTTTTTCCTTTCGGTTCTGTGGAGATCTCTGAGGAAACTAAAGAGCATGTTTTGTTGCTGAACGAGCAAGCAAGGAGGGCAAGGCTTGAATTTGAGCAAGAAGATAAACGGGTTGTGGTGAGTGTTGTGTCGGGTTTGACCCGATTTGAGAACCGGGTTCCCCCGGGTGAGGGTGATTTGAAGTGGGTTCTTGAGTATATTGGGGTTAAAAAGTGGAGTGAGTGCAACAAAGAGGTTAAGTTTTTGGAGGGTGAAATTGGGTTTGAGTGCTTGAAGAATGAGGAGAAGGGGAAGATGGTTTTTTTGAGTAGTTTGATGGGGTTCATGAGTTATTGTAGATGTGTGGTGATCGAGGATGTTGATTGTGAAGAGAGTAACAAAAAAATTAATGTAAGAGAAAGTAGTGTTGAGAGTGAGGTGAGTCTGAGTTTGACTTTTCTTAACTCGGATGATTTTAGATGTCCAATCTCTTTGGAGTTGATGAGTGATCCTGTGACTATAGAGACAGGTCACACTTATGATCGTTCTTCGATTCTGAAGTGGTTTAGTAGTGGGAATTTGATGTGTCCCAAGACGGGTAAAAGGCTTAGCAGCACTGAAATGGTTCCAAATTTGGTGCTTAGAAGGTTGATTCAACAACATTGCTATACGAATGGCATAAGCATTCCCTTTGTTGATTCGAGTCATAGGAATCGTGAAATTACTAGGACAGTGGAGCCAGGGAGTGTGGCAGCAGAGGGAGCAATGAGAATGTTGGCTAGTTTTCTGAATGGAATGATTGAGAATGGAAGTGGAGAAGAGAAGAATAGAGGTGCTTTTGAGATAAGGCTTCTTTCCAAGACAAGCATTTTTAGTAGATCTTGTTTGGTGGAAGCTGGTTTGGCTCCTCTTCTGTTGAAGTTGTTGTCATCGAGTGATTCGTTGACTCAAGAGAATGCTGCTGCAGCCCTTCTCAACCTCTCAAAATGTGCAAAGAGTAGAAGTGTGATGGTTGAGAAATGGGGTTTGGAATTGATCATTGATGTCTTAAGGAAGGGGCTGAAGATTGAAGCTAGCCAGCATGTTGCTGCTGTGTTGTTTTACCTTAGTGCCGAGTATGGAAACTTGATAGGTGAAGAGCCAGAAGCAATACCATCATTGATAAGGCTAATCAAAGACGGCTCTTATCGAAGCAAGAAAAATGGGTTGGTTGCAATTTTCGGCCTTCTTAAGCACCCGGAAAACCATAGGAGGGTGCTAGAAGGTGGAGCAGTTTCTTCGCTAGTTGACATCTTAAAAGGGTGTGAAAAGGAAGACCTTATCACAGACTCGCTCGCAATTCTAGCAACTCTGGCAGAGAGGAGTGAGGGGATGTTAGCAATCCTTCACGGAGAGGCTTTGCATGTAGCTGTTGAAATTTTGAGTTGTTCTACTTCAAGGGTGGGAAAGGAGCACTGTGTGGCTTTGTTGCTTTCTTTGTCACTACATGGTGGAGAAGATGTGGTTGCTTATTTAGTGAAGAGAACTTCTCTAATGGGATCTTTGTATTCCCAACTCAGTGAAGGCACATCGAGAGCAAGCAAGAAAGCCAGTGCTCTCATCAGAGTCCTCCATGATTTTTATGAAAGGAGGTCCTCTGGTTTCAAGGCTTCAGTTATTCCACAAGAACAGTTCATTCATGTTCGGTAA 2142 0.4444 MKTKQNIDSRIQNTKLQHVPFSMIRNTNRSDRRVLTSPVVHPCDNIALSTLLPSLITLSNAISNFQHSSFPCNKRNARIAIRLTRLLQPFLHEIRDHHSGLADPATLSLSELHLTFQKLLFLLEDLTRKGAKLYMLMESDRVATQFRVISRSVATALDVFPFGSVEISEETKEHVLLLNEQARRARLEFEQEDKRVVVSVVSGLTRFENRVPPGEGDLKWVLEYIGVKKWSECNKEVKFLEGEIGFECLKNEEKGKMVFLSSLMGFMSYCRCVVIEDVDCEESNKKINVRESSVESEVSLSLTFLNSDDFRCPISLELMSDPVTIETGHTYDRSSILKWFSSGNLMCPKTGKRLSSTEMVPNLVLRRLIQQHCYTNGISIPFVDSSHRNREITRTVEPGSVAAEGAMRMLASFLNGMIENGSGEEKNRGAFEIRLLSKTSIFSRSCLVEAGLAPLLLKLLSSSDSLTQENAAAALLNLSKCAKSRSVMVEKWGLELIIDVLRKGLKIEASQHVAAVLFYLSAEYGNLIGEEPEAIPSLIRLIKDGSYRSKKNGLVAIFGLLKHPENHRRVLEGGAVSSLVDILKGCEKEDLITDSLAILATLAERSEGMLAILHGEALHVAVEILSCSTSRVGKEHCVALLLSLSLHGGEDVVAYLVKRTSLMGSLYSQLSEGTSRASKKASALIRVLHDFYERRSSGFKASVIPQEQFIHVR* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0284 713 SMART arm_5 481 522 IPR000225 GO:0005515
Gso2g0284 713 SMART arm_5 439 480 IPR000225 GO:0005515
Gso2g0284 713 SMART arm_5 563 604 IPR000225 GO:0005515
Gso2g0284 713 Gene3D - 532 688 IPR011989 -
Gso2g0284 713 CDD RING-Ubox_PUB 310 352 IPR045210 -
Gso2g0284 713 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 18 27 703 - -
Gso2g0284 713 ProSiteProfiles U-box domain profile. 305 379 IPR003613 GO:0004842|GO:0016567
Gso2g0284 713 SUPERFAMILY ARM repeat 406 688 IPR016024 -
Gso2g0284 713 Pfam U-box domain 308 374 IPR003613 GO:0004842|GO:0016567
Gso2g0284 713 Pfam Armadillo/beta-catenin-like repeat 444 479 IPR000225 GO:0005515
Gso2g0284 713 SUPERFAMILY RING/U-box 308 379 - -
Gso2g0284 713 SMART Ubox_2 309 372 IPR003613 GO:0004842|GO:0016567
Gso2g0284 713 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 451 493 IPR000225 GO:0005515
Gso2g0284 713 Gene3D - 384 531 IPR011989 -
Gso2g0284 713 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 307 380 IPR013083 -
Gso2g0284 713 PANTHER U BOX DOMAIN-CONTAINING 27 703 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0284 Gso-Chr2 3089047 3091431 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0284 23 711 U-box Gene Family AT1G60190 44.587 0.0 543
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0284 - - gmx:100795816 1295.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0284 2 3089047 3091431 Gso2g0284 2 3089047 3091431 ECH