Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0276 ATGTATAGGGGTCACTCTAGAATCCTTCAAAGCAATGGTGCTATCACCAACCCCCCTATTGTTTCTCCTTCTTCTTCTTCTTCTTCTTCTTCACCCTCAGTGCCTTATGTGTCTAACTACCAGAAACAAACAGCTCCATCCCCAAGTTCTTCATCTGGGAACAGAATAAGCCCTGCAATTCTTTTCATCATAGTAATTTTAGCTGTGCTGTTTTTCATCTTGGGTCTCCTTCACTTGCTTGTTAGATTTCTCATAAAGCAAAGGTCTTCTTCCAATAATTCATCAATTCCCCAATCAAATAGATACCCTGACATGTCTGATTCAGATGCTTACCAAAGACAGTTACAGCAACTCTTCCATCTTCATGACTCAGGCCTGGATCAGGCTTTCATAGATGCTCTCCCTGTCTTCTTTTACAAAGAGATAATTGGCTTGAAAGAGCCTTTTGATTGTGCTGTTTGCCTCTGTGAGTTCTTGGAACAAGACAAGCTCAGATTGCTTCCCATGTGTAACCATGCTTTTCACATTGAATGCATAGACACATGGTTGCTTTCCAATTCAACTTGCCCTCTTTGTAGAGGGACTCTCTATTCACCCTTTGAAAACTCAGTTTTTGACTTTGAAAGTCAACTTGAGGAAGATGGGATGTCAGGAAGTGGTGGAATTGGTTCTGTTAACAAAACTACAGAAAGTCACATAGTGAATGGGAAAAGGGTGTTTTCTGTTAGGCTTGGAAAATTTAGAAGCACTAATAATAATCAAGATGGGATGGTGGTGGAGAGAGGTGAAGGAGAGAGTAGTACTAGTAGTGTTAATTTGGATGTGAGGAGATGCTATTCAATGGGGTCTTTTCAGTATGTGGTGGCTGATTCAGATCTGAGAGTGGCTTTAGGCACTAGCAGTGGCAGCATGAGACAACTGAAGGGAAGAACAGCCACAAATGGAAGTTCTTTCATTGATGGAGATGCTGTTGAGGGCAAGAAAATCAACATTGCAAGGAAAGGTGAAAGCTTTTCTGTTTCCAAGATCTGGCAATGGTCTAGGAAAGATAAGTTGACAGGTTCATCAGATGCTCATTTCCTTAATAGTTCTACTGTCACTTCAACTTTGCCATGGATGAATAAAGCCAGAGGAGTGTCAAAAGTGGTTTTTAGGAGCAGGAAGATGAAAGTGAAGTCAAATTGGGGTTGCTTTTTGGATGCTGTGGTTTTCTCTAGAGGGCTTGCTTTATTCGCTTTTTGGGTTAAAAAGAAGTGA 1257 0.4105 MYRGHSRILQSNGAITNPPIVSPSSSSSSSSPSVPYVSNYQKQTAPSPSSSSGNRISPAILFIIVILAVLFFILGLLHLLVRFLIKQRSSSNNSSIPQSNRYPDMSDSDAYQRQLQQLFHLHDSGLDQAFIDALPVFFYKEIIGLKEPFDCAVCLCEFLEQDKLRLLPMCNHAFHIECIDTWLLSNSTCPLCRGTLYSPFENSVFDFESQLEEDGMSGSGGIGSVNKTTESHIVNGKRVFSVRLGKFRSTNNNQDGMVVERGEGESSTSSVNLDVRRCYSMGSFQYVVADSDLRVALGTSSGSMRQLKGRTATNGSSFIDGDAVEGKKINIARKGESFSVSKIWQWSRKDKLTGSSDAHFLNSSTVTSTLPWMNKARGVSKVVFRSRKMKVKSNWGCFLDAVVFSRGLALFAFWVKKK* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0276 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 198 IPR013083 -
Gso2g0276 418 SMART ring_2 151 192 IPR001841 -
Gso2g0276 418 CDD RING-H2_PA-TM-RING 150 193 - -
Gso2g0276 418 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 371 - -
Gso2g0276 418 ProSiteProfiles Zinc finger RING-type profile. 151 193 IPR001841 -
Gso2g0276 418 Pfam Ring finger domain 150 193 IPR001841 -
Gso2g0276 418 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 371 - -
Gso2g0276 418 MobiDBLite consensus disorder prediction 12 53 - -
Gso2g0276 418 SUPERFAMILY RING/U-box 130 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0276 Gso-Chr2 2987567 2990413 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0276 75 356 C3H Transcription Factor Family AT2G18650 41.562 2.53e-61 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0276 - - gmx:100794750 775.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0286 1 3409352 3411139 Gso2g0276 2 2987567 2990413 GST
Gso2g0276 2 2987567 2990413 Gso18g1093 18 19596495 19598476 PCT
Gso18g1093 18 19596495 19598476 Gso2g0276 2 2987567 2990413 PCT