Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0246 ATGCCGGGGCACCGCTCGAAGTCGGAGAAGCACGACGTCGACGGCGGCGGCGGTGAGAAGCAGCTCCGGCGGGACCCCTACGAGGTCCTCGGCGTCTCGCGCAACTCCACGGATCAGGAAATCAAAACCGCGTACCGCAAAATGGCGCTCAAATATCATCCGGACAAGAATGCTAATGATCCTAAAGCAGCTGATATGTTTAAAGAGGTTACCTTCTCTTATAATATCCTGTCAGATCCTGATAAACGGCGTCAATACGACTCAGCTGGCTTTGAGGCTGTTGAATCAGACAACCAAGAGTTGGAGTTAGATCTTTCAAGTCTGGGTGCTGTCAATACAATGTTTGCAGCACTTTTTAGTAAACTTGGTGTGCCAATTAAGACAACTGTATCTGCCACAGTTTTGGAAGAGGCACTCAATGGTTTGGTGACCATTCGTCCACTGCCATTGGGACATAATATATCTAAAAGGGTTGAGAAGCAATGTGCACACTTCTATTCAGTTACAATAACAGAAGAGGAAGCACGAGCTGGATTTGTTTGTCGAGTACATTCGTCAGACAAAAGCAAGTTCAAGTTATTGTATTTCGATCAGGAAGACAACAGTGGTTTAAGTCTTGCACTCCAGGAAGACAGTGCAAAAACAGGGAAGGTTACCTCTGCTGGGATGTATTTTCTTGGGTTTCCTGTTTATCGATTAGATCAAACAATGAACTCTATAGCTGCTGCTAAGGATCCAGATACATCATTTTTCAGAAAGCTAGACGGGTTTCAGCCCTGTGAATTAACAGAATTGAAGGCTGGTACCCATGTATTTGCTGTTTATGGTGACAACTTTTTCAAAAGTGCCAATTATACAATAGAAGCCCTGTGTGCTGCACCCTTTAGTGAAGAAAAAGAAAATTTAAGAAACATAGAAGCTCAAATTTTGTCTAAAAGGGCAGAAATATCAAAGTTTGAGGCAGAATATCGAGAGGTTCTGGCACAATTCTCAGAGATGACAAATAGATATGCACATGAAATGCAAGCAATTGATGAGCTACTGAAGAATAGAAATGAAATACAGGCATCATACACCAGTGCTCCTTTAAAACGAACTACAAGTAGGAGCAGAAGTAAAAATTCTTCCAAGGAGGCAAAAGAAGATGGCCAAGCAAAGGAAAAGAGGAGTACAAGAGAACGGCCAAAGAAGAAGAAATGGTATAACCTTCACTTAAGAGTTGATAAGAGAAAGGCTTGCTAA 1242 0.4259 MPGHRSKSEKHDVDGGGGEKQLRRDPYEVLGVSRNSTDQEIKTAYRKMALKYHPDKNANDPKAADMFKEVTFSYNILSDPDKRRQYDSAGFEAVESDNQELELDLSSLGAVNTMFAALFSKLGVPIKTTVSATVLEEALNGLVTIRPLPLGHNISKRVEKQCAHFYSVTITEEEARAGFVCRVHSSDKSKFKLLYFDQEDNSGLSLALQEDSAKTGKVTSAGMYFLGFPVYRLDQTMNSIAAAKDPDTSFFRKLDGFQPCELTELKAGTHVFAVYGDNFFKSANYTIEALCAAPFSEEKENLRNIEAQILSKRAEISKFEAEYREVLAQFSEMTNRYAHEMQAIDELLKNRNEIQASYTSAPLKRTTSRSRSKNSSKEAKEDGQAKEKRSTRERPKKKKWYNLHLRVDKRKAC* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0246 413 MobiDBLite consensus disorder prediction 1 35 - -
Gso2g0246 413 MobiDBLite consensus disorder prediction 371 390 - -
Gso2g0246 413 Pfam DnaJ domain 25 87 IPR001623 -
Gso2g0246 413 ProSiteProfiles dnaJ domain profile. 25 90 IPR001623 -
Gso2g0246 413 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 1 412 - -
Gso2g0246 413 CDD DnaJ 25 79 IPR001623 -
Gso2g0246 413 MobiDBLite consensus disorder prediction 358 401 - -
Gso2g0246 413 PANTHER DNAJ DOMAIN-CONTAINING PROTEIN-RELATED 1 412 - -
Gso2g0246 413 ProSitePatterns Nt-dnaJ domain signature. 67 86 IPR018253 -
Gso2g0246 413 Gene3D DnaJ domain 17 108 IPR036869 -
Gso2g0246 413 PRINTS DnaJ domain signature 27 45 IPR001623 -
Gso2g0246 413 PRINTS DnaJ domain signature 45 60 IPR001623 -
Gso2g0246 413 PRINTS DnaJ domain signature 62 82 IPR001623 -
Gso2g0246 413 PRINTS DnaJ domain signature 82 101 IPR001623 -
Gso2g0246 413 SUPERFAMILY Chaperone J-domain 24 94 IPR036869 -
Gso2g0246 413 SMART dnaj_3 24 82 IPR001623 -
Gso2g0246 413 MobiDBLite consensus disorder prediction 1 27 - -
Gso2g0246 413 Coils Coil 295 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0246 Gso-Chr2 2653884 2658648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0246 23 88 C2H2 Transcription Factor Family AT1G74250 42.254 4.62e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0246 - - gmx:100800929 808.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0246 2 2653884 2658648 Gso2g0246 2 2653884 2658648 ECH
Gso1g0313 1 3833127 3837622 Gso2g0246 2 2653884 2658648 GST