Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0245 ATGGAAAAGGATATCATTGATCTTTCTCCAACATGGGATTGTGACAATGGCAATTCCACTGAGAAAAGGCTCAGGCTATTTGGCTTTGAGCTAAACCCTTCATCAAAAGAGGGTTGTGCCAAAGAATCTGGTGAAGGAGATGAAAGTGTGAACTCCTCTAACTCAGCTTCTTCTGGAGGAGACAAAACTGTGCAAGAGAAAACATCAGCCAAAGACCCTGATGAGAGAAAATTTGAGTGCCAATATTGTTACAAGGAATTTGCAAACTCCCAAGCCCTAGGGGGGCACCAAAATGCTCACAAGAAAGAGAGAATGAAGAAGAAGAGGTTGCAGCTTCAATCCATAAACCGTTACCTACAACACCCTTTCCAAAGCAACCATGGCTTTGCTTACCCTTCTGATACTCCTTGGTTCTATGACCCCTCTACCTATAATAATAACTCTGAGTTCACCCTTTGTGAAGAACCTCAGATTAGCTTCAATTCAAATAGCGTTTTGGATTCCAATTTTTCTAATGATCAGAAAACTAGTTGGTATTCTCTTGCATCTCACCCTTCTAATATCCAACAAGATACTTGCATGTTTACTTTCTCATCCAATGCAAGTAATAATAATAATAGTCCTTTCATATTCAAGCCTTGCCATTTCCCTGCTTCAAATCAGAACCATAATAAAACCCTAGATCTTCAACTAGGTCTCAACTTGGAGTCAAATACAAGAAGTTCTCTAAGAAGGATGTAA 741 0.3954 MEKDIIDLSPTWDCDNGNSTEKRLRLFGFELNPSSKEGCAKESGEGDESVNSSNSASSGGDKTVQEKTSAKDPDERKFECQYCYKEFANSQALGGHQNAHKKERMKKKRLQLQSINRYLQHPFQSNHGFAYPSDTPWFYDPSTYNNNSEFTLCEEPQISFNSNSVLDSNFSNDQKTSWYSLASHPSNIQQDTCMFTFSSNASNNNNSPFIFKPCHFPASNQNHNKTLDLQLGLNLESNTRSSLRRM* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0245 246 MobiDBLite consensus disorder prediction 33 72 - -
Gso2g0245 246 Gene3D Classic Zinc Finger 51 127 - -
Gso2g0245 246 Pfam C2H2-type zinc finger 78 103 - -
Gso2g0245 246 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Gso2g0245 246 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 105 IPR013087 -
Gso2g0245 246 MobiDBLite consensus disorder prediction 46 64 - -
Gso2g0245 246 PANTHER ZINC FINGER PROTEIN 5 18 235 IPR044299 GO:0010090
Gso2g0245 246 PANTHER ZINC FINGER PROTEIN 5 18 235 - -
Gso2g0245 246 SUPERFAMILY beta-beta-alpha zinc fingers 74 105 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0245 Gso-Chr2 2633751 2634868 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0245 75 141 C2H2 Transcription Factor Family AT1G68360 44.444 3.08e-16 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso2g0245 zf-C2H2_6 6.7e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0245 - - gmx:100799857 497.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0245 2 2633751 2634868 Gso2g0245 2 2633751 2634868 ECH
Gso1g0314 1 3871858 3872932 Gso2g0245 2 2633751 2634868 GST