Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0225 ATGAAGAGGTCCAGAGATGAAGTTTTCACGAGTTGTTCTCAACTCAAACGGCCCGTGGTGTCTTCACGAGGAGAAGCGTCTGGGCAACCGCAGATAATGAACGGAGGTGCTCAGAAACTGACAACTAATGATGCCCTAGCATATCTCAAGGCAGTAAAGGATATATTTCAAGATAAGAGGGACAAGTATGATGACTTTTTGGAGGTTATGAAAGATTTCAAGGCTCAAAGAATTGATACTGCGGGTGTCATTGCAAGAGTGAAGGAACTGTTTAAAGGCCATAGAGATCTTATATTGGGATTTAACACCTTCTTGCCTAAGGGTTACGAAATCACACTTCCATCAGAGGATGAACAACTTGCCCCAAAGAAACCTGTTGAATTTGAAGAGGCTATAAATTTTGTGAACAAGATAAAGACTCGTTTTCAAGGTGATGATCATGTGTACAAATCATTTCTTGACATATTGAATATGTACAGAAAGGAAAACAAATCTATTACTGAGGTCTACCAGGAGGTTGCTGCTATTTTCCAGGACCACCCTGATCTTCTTGATGAGTTTACTCATTTTCTTCCAGATGCTTCTGCAGCTGCCTCTACTCATTTTGTTTCTGCTCGGAATTCTATGCTTCGTGATAGGAGCTCTGCAATGCCAACAATACGACAATTGCACGTTGAAAAGCGAGAAAGGACCATTGTTTCACATGGTGATCATGACCCCAGTGTTGATCGTCCTGACCCAGATAACGACAGAGGTCTGTTAAGGATAGAAAAGGAGAGGAGACGTGTGGAGAAGGAAAAGGAACGTAGAGAAGATAGAGACAAGAGAGATCGTGAAAGGGATGATAGAGATTTTGAGCATGATGGGGCTCGAGATAGGGAGCGATTCTCTCACAAACGGAATCGTAAGGTTGAAGACTCTGGAGCTGAACCATTTCTTGATGCAGATGAAAATTTTGGTGCGCCTCCTATGCCATCCACTTGTGATGATAAAAATTCTCTGAAAAGTATGTACAGTCAAGAATTTGCTTTCTGCGAAAATGTCAAAGAAAAATTACGAAATCCTGATGACTACCAGGAATTTTTGAAGTGCTTACATATCTACAGCAGGGAAATAATTACCCGACATGAGTTGCAGTCATTGGTGGGCGATTTACTGGGAAAATATCCAGATCTTATGGAGGGGTTTAATGAATTTTTGCTTCAATCTGAAAAGAATGATGGTGGATTCCTTGCTGGTGTTATGAATAAAAAGTCCTTATGGAATGATGGACATGGACTGAAACAAATAAAGGTTGACGACGGGGATAGAGATCGGGATCGAGATAGAGATAGAGACCGTTATAGGGATGATGGGATGAAAGAAAGGGACCGTGAATTCCGAGAAAGGGACAAATCTACTGTGATTGCCAACAAGGATGTTTTAGGTTCTAAGATGTCTCTATATCCCAGCAAGGAAAAGTATTTATCCAAACCTATAAATGAGCTGGACCTTTCTAACTGCGACCAGTGCACTCCTAGTTACCGCCTCTTACCGAAAAATTACCCAATACCTGTAGCTAGCCAGAAAACAGAACTTGGTGCCGGAGTGTTGAATGATCACTGGGTGTCTGTCACTTCAGGAAGTGAGGATTATTCCTTCAAACATATGCGCAAAAATCAGTATGAAGAGAGCTTGTTTAGATGTGAAGATGACAGGTTTGAACTTGACATGTTGTTAGAGTCTGTAAATGTGACAACCAAACGAGTAGAAGAGCTGTTAGACAAGATCAATAGTAATATAATTAAAGGAGACAGCCTAATTCGTATTGAGGAGCACTTAACAGCTATAAATCTTAGGTGTATTGAACGGTTATACGGTGACCATGGGCTTGATGTGATGGAAGTGTTAAGGAAGAATGCACCTCTAGCTTTGCCAGTGATATTAACACGCTTGAAGCAGAAACAAGAAGAGTGGGCAAGGTGCCGTGCTGATTTTAGTAAAGTTTGGGGTGAAATATATGCTAAGAACTATCACAAATCTCTTGATCACCGTAGCTTCTACTTTAAGCAACAGGATACAAAAAGCTTGAGCACCAAAGCCTTGCTGGCAGAAATCAAAGAAATCAGTGAAAAGAAACGCAAGGAAGATGATGTTCTTCTTGCTATTGCTGCTGGAAATAGACGGCCAATTCTTCCAAACTTGGAGTTTAAGTATTCTGATCCAGATATTCATGAAGATTTATATCAGCTCATAAAATATTCCAGTGGAGAAATTTGCACAACCGAACACGTGGATAAAGTTATGAAGGTTTGGACAACATTTTTAGAACCCATGCTTTGTGTTCCTTGTCGGCCCCAGGGTGCAGAGGATACAGAAGATGTTGTCAAGGCTAAGAATAATCATGTCAAAAATGGCACTGCAACTGTTGCTGAAAGTGACTGTAGCCCTGTTGTGGGTGCTATCATAATGAATCCAAAGCATATAAATGTTTCCAGAAATGGGGATGATTGTATGCCATTAGATCAATCAACTTCTAATAAAGCATGGCAGTCAAATGGTGGGGTTAGAGAGGATAGGTATCTTGATGACTGTGCATTGCGTAAAACTGAAACTTTGGGCAGCAATACACAGCATGGTAAAATGAATCGTATTGCATTCACACCTGATGGACCATCAGGATTTAACAATAAGCAAGACCAGTCCAGTGAACGGTTAGTGAATGCTAATGTCTCACCAGCATCTGGAATGGAGCAAAGCAATGGAAGGACAAACATAGATAATTTGTCAGGACTCACTGCCACTCCAACTAGACCTGGTAATGCTTCTGTTGAGGGAGGACTTGATATACCGTCATCAGAGGGTGGTGATTCTACAAGACTGGGTACATCCACAAATGGGGCCATCACCGGAGGCACCAAAGTTCACCGGTACCAAGAGGAATCAGTTCGAGCCTTCAAAAGTGAAAGAGAAGAGGGTGAGTTATCTCCTAATGGAGACTTTGAAGAAGATAACTCTGAAGTTTATGGAGGTAATGGTTTGGATGCAGTGCATAAAGGAAAGGATGGTGGTGTGAGTCGGCAATACCAAAATAGACACGGGGAAGAAGTTTGTGGTGAAACTAGAGGAGAAAACGATGCTGATGCTGATGATGAAGGTGAAGAAAGCCCTCACAGGTCATCAGAGGACAGCGAAAATGCATCTGAAAATGTTGATGTTTCTGGAAGTGAGTCAGCTGATGCTGAGGAGTGTTCTCGAGAAGAGCATGAGGATGGGGAACATGATAACAAGGCTGAGAGTGAAGGTGAAGCCGAAGGAATAGCTGATGCTCATGATGTTGAAGGTGATGGAATGCCATTGCCATATTCTGAACGCTTTCTACTAACTGTGAAGCCTCTAGCAAAGCATGTTCCTCCAATGTTACATGAGAAGGACATGAATTCACGAGTTTTCTATGGAAACGATTCCATTTATGTGCTGCTTAGACTTCATCAGACATTGTATGAGAGGATACAATCAGCAAAGATTAACTCATCATCCGCCGATAGGAAATGGAAGGCTTCAAGTGATACAAGCTCCACCGATCAATATGACAGGTTCATGAATGCCCTTTACAGTTTGCTGGATGGTTCTTCTGATAATACAAAATTTGAGGATGATTGTCGAGCTATAATTGGAATTCAATCATATGTCTTATTCACATTAGACAAGTTGATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCCGCTGATGAGATGGATACCAAGCTTTTACAACTATATGCATATGAGAAATCGAGAAAACCCGGAAAATTTGTTGACATGGTTTATCATGAAAATGCCCGTGTTCTTCTCCATGATGAGAACATATATCGTATTGAATATTCACCTGGACCAATGAAACTGTCTATTCAACTGATGGACTCTGGACATGATAAACCTGAAGTGACTGCTGTGTCAATGGACCCTAATTTTTCAACCTATCTACACAATGACTTCCTATCTGTCGTCCCTGACAAAAAAGAGAAGTCAGGAATTTTCTTGAAGAGGAATAAACGTAGATATGCTGGTAATGATGAATTTTCAAGCCAGGCTATGGAAGGACTACAAATTATTAATGGTCTGGAGTGTAAGATAGCTTGCAGTTCATCTAAGGTCTCATATGTTTTAGATACCGAAGACTTTTTGTTTCGGATAAGAAGGAAAAAAAGAGTTTTGCATCCAAAGAGTTCAGGCGCCCATGAACAGGCACAGTCTCCAAAGAGTTCAAGCAGAGTACAACGATTCCGCAATTTGTTTTCCATTACATGA 4293 0.41 MKRSRDEVFTSCSQLKRPVVSSRGEASGQPQIMNGGAQKLTTNDALAYLKAVKDIFQDKRDKYDDFLEVMKDFKAQRIDTAGVIARVKELFKGHRDLILGFNTFLPKGYEITLPSEDEQLAPKKPVEFEEAINFVNKIKTRFQGDDHVYKSFLDILNMYRKENKSITEVYQEVAAIFQDHPDLLDEFTHFLPDASAAASTHFVSARNSMLRDRSSAMPTIRQLHVEKRERTIVSHGDHDPSVDRPDPDNDRGLLRIEKERRRVEKEKERREDRDKRDRERDDRDFEHDGARDRERFSHKRNRKVEDSGAEPFLDADENFGAPPMPSTCDDKNSLKSMYSQEFAFCENVKEKLRNPDDYQEFLKCLHIYSREIITRHELQSLVGDLLGKYPDLMEGFNEFLLQSEKNDGGFLAGVMNKKSLWNDGHGLKQIKVDDGDRDRDRDRDRDRYRDDGMKERDREFRERDKSTVIANKDVLGSKMSLYPSKEKYLSKPINELDLSNCDQCTPSYRLLPKNYPIPVASQKTELGAGVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLDKINSNIIKGDSLIRIEEHLTAINLRCIERLYGDHGLDVMEVLRKNAPLALPVILTRLKQKQEEWARCRADFSKVWGEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEISEKKRKEDDVLLAIAAGNRRPILPNLEFKYSDPDIHEDLYQLIKYSSGEICTTEHVDKVMKVWTTFLEPMLCVPCRPQGAEDTEDVVKAKNNHVKNGTATVAESDCSPVVGAIIMNPKHINVSRNGDDCMPLDQSTSNKAWQSNGGVREDRYLDDCALRKTETLGSNTQHGKMNRIAFTPDGPSGFNNKQDQSSERLVNANVSPASGMEQSNGRTNIDNLSGLTATPTRPGNASVEGGLDIPSSEGGDSTRLGTSTNGAITGGTKVHRYQEESVRAFKSEREEGELSPNGDFEEDNSEVYGGNGLDAVHKGKDGGVSRQYQNRHGEEVCGETRGENDADADDEGEESPHRSSEDSENASENVDVSGSESADAEECSREEHEDGEHDNKAESEGEAEGIADAHDVEGDGMPLPYSERFLLTVKPLAKHVPPMLHEKDMNSRVFYGNDSIYVLLRLHQTLYERIQSAKINSSSADRKWKASSDTSSTDQYDRFMNALYSLLDGSSDNTKFEDDCRAIIGIQSYVLFTLDKLIYKLVKQLQAVAADEMDTKLLQLYAYEKSRKPGKFVDMVYHENARVLLHDENIYRIEYSPGPMKLSIQLMDSGHDKPEVTAVSMDPNFSTYLHNDFLSVVPDKKEKSGIFLKRNKRRYAGNDEFSSQAMEGLQIINGLECKIACSSSKVSYVLDTEDFLFRIRRKKRVLHPKSSGAHEQAQSPKSSSRVQRFRNLFSIT* 1431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0225 1430 MobiDBLite consensus disorder prediction 1072 1097 - -
Gso2g0225 1430 MobiDBLite consensus disorder prediction 949 965 - -
Gso2g0225 1430 MobiDBLite consensus disorder prediction 906 933 - -
Gso2g0225 1430 SMART hdac_interact2seq4b 500 600 IPR013194 -
Gso2g0225 1430 SUPERFAMILY PAH2 domain 38 107 IPR036600 GO:0006355
Gso2g0225 1430 Coils Coil 253 276 - -
Gso2g0225 1430 MobiDBLite consensus disorder prediction 970 988 - -
Gso2g0225 1430 Pfam C-terminal domain of Sin3a protein 1144 1390 IPR031693 -
Gso2g0225 1430 Gene3D Paired amphipathic helix 44 106 IPR036600 GO:0006355
Gso2g0225 1430 Gene3D Paired amphipathic helix 332 404 IPR036600 GO:0006355
Gso2g0225 1430 MobiDBLite consensus disorder prediction 232 310 - -
Gso2g0225 1430 PANTHER SIN3B-RELATED 5 1400 IPR039774 GO:0003714
Gso2g0225 1430 Pfam Sin3 family co-repressor 503 593 IPR013194 -
Gso2g0225 1430 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 5 1400 - -
Gso2g0225 1430 MobiDBLite consensus disorder prediction 431 463 - -
Gso2g0225 1430 MobiDBLite consensus disorder prediction 1401 1420 - -
Gso2g0225 1430 SUPERFAMILY PAH2 domain 123 193 IPR036600 GO:0006355
Gso2g0225 1430 MobiDBLite consensus disorder prediction 1406 1420 - -
Gso2g0225 1430 ProSiteProfiles PAH domain profile. 124 194 IPR003822 GO:0006355
Gso2g0225 1430 SUPERFAMILY PAH2 domain 332 400 IPR036600 GO:0006355
Gso2g0225 1430 MobiDBLite consensus disorder prediction 232 332 - -
Gso2g0225 1430 Gene3D Paired amphipathic helix 123 195 IPR036600 GO:0006355
Gso2g0225 1430 Pfam Paired amphipathic helix repeat 147 191 IPR003822 GO:0006355
Gso2g0225 1430 Pfam Paired amphipathic helix repeat 356 400 IPR003822 GO:0006355
Gso2g0225 1430 Pfam Paired amphipathic helix repeat 61 105 IPR003822 GO:0006355
Gso2g0225 1430 ProSiteProfiles PAH domain profile. 38 108 IPR003822 GO:0006355
Gso2g0225 1430 MobiDBLite consensus disorder prediction 906 1097 - -
Gso2g0225 1430 MobiDBLite consensus disorder prediction 1045 1059 - -
Gso2g0225 1430 ProSiteProfiles PAH domain profile. 334 403 IPR003822 GO:0006355
Gso2g0225 1430 MobiDBLite consensus disorder prediction 1013 1037 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0225 Gso-Chr2 2374272 2386644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0225 29 132 WRKY Transcription Factor Family AT4G12020 52.830 1.86e-23 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso2g0225 Sin3a_C 5.7e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0225 K11644 - gmx:100811928 2776.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0225 2 2374272 2386644 Gso2g0225 2 2374272 2386644 ECH
Gso1g0329 1 4054316 4066655 Gso2g0225 2 2374272 2386644 GST
Gso2g0225 2 2374272 2386644 Gso18g1060 18 18130992 18142519 PCT
Gso18g1060 18 18130992 18142519 Gso2g0225 2 2374272 2386644 PCT