Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0221 ATGTCTCGCACGTGCTCACTGTGCGGCAACAACGGCCACAACTCGCGGACATGCACCGACGGTGGCGCCGCCGCTTCCTGCGGCGGGTCTCCCAGGGAGAACGGCATCATGCTGTTCGGCGTAAGAGTTATGACCGAAGCTAACTCCTCCTTCCGGAAGAGCGCCAGCATGAACAACCTCTCACAGTACGACGCGGAATCCAACGCCGCCGACGCCGGCTACGCCTCCGACGACGTTGTTCATGCCTCCGGCCGCACGCGCGAGCGCAAGCGAGGTGTTCCTTGGACGGAGGAAGAGCATAGGTTGTTCCTGTTAGGGTTACACAAAGTCGGAAAAGGAGATTGGAGAGGAATTTCTCGAAACTTCGTGAAAACTCGCACGCCTACTCAGGTCGCTAGTCACGCTCAGAAGTACTTCCTCCGCCGCCACAACCAGAACCGCCGTCGCCGGAGATCTAGCCTCTTCGACATCACCACGGATACGGTGATGGAATCTTCTACTATAATGGAAGAAGAACAAGTTCCGCAAGAAACGATGGCGGCGCCTATCCCCGCCGCATATCCGCCTTTTCCCGGCGCGGGTTTTCCGATGAGTCTATCTCCGGTGGTGTTGCCGGTGAGTGGTGAGAGACTGACCAAGCCGATCAGGCCGACGCCGATTGTACCGGTGCCTCCGTCTTCGAAGATGGCTAATTTGAACTTGAAAGGGAAAGCTTCTCGGACAAATCTCATTGAGCCTTTGCCGTTGTCGTTGAATCTGCCATCGCCAACGCCGCGGTCTCAGGATCAGTCGCCGGCGAATAGTGGCCACTCGTCGCCGTCATCGTCTTCGGCGGCGGCTTTTCAGGCTATGTCTGCAGCGAAGTTCGGCGGCGGGGGGGATAGTATCATCAGCGTTGCTTGA 903 0.5792 MSRTCSLCGNNGHNSRTCTDGGAAASCGGSPRENGIMLFGVRVMTEANSSFRKSASMNNLSQYDAESNAADAGYASDDVVHASGRTRERKRGVPWTEEEHRLFLLGLHKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRHNQNRRRRRSSLFDITTDTVMESSTIMEEEQVPQETMAAPIPAAYPPFPGAGFPMSLSPVVLPVSGERLTKPIRPTPIVPVPPSSKMANLNLKGKASRTNLIEPLPLSLNLPSPTPRSQDQSPANSGHSSPSSSSAAAFQAMSAAKFGGGGDSIISVA* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0221 300 ProSiteProfiles Myb-like domain profile. 87 139 IPR001005 -
Gso2g0221 300 MobiDBLite consensus disorder prediction 254 280 - -
Gso2g0221 300 ProSiteProfiles SANT domain profile. 90 143 IPR017884 -
Gso2g0221 300 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 90 141 IPR006447 GO:0003677
Gso2g0221 300 Pfam Myb-like DNA-binding domain 94 139 IPR001005 -
Gso2g0221 300 MobiDBLite consensus disorder prediction 245 280 - -
Gso2g0221 300 CDD SANT 94 139 IPR001005 -
Gso2g0221 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 143 IPR017930 -
Gso2g0221 300 PANTHER TRANSCRIPTION FACTOR KUA1 1 297 - -
Gso2g0221 300 Gene3D - 93 144 - -
Gso2g0221 300 SUPERFAMILY Homeodomain-like 89 142 IPR009057 -
Gso2g0221 300 SMART sant 91 141 IPR001005 -
Gso2g0221 300 PANTHER TRANSCRIPTION FACTOR MYB1R1-LIKE 1 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0221 Gso-Chr2 2326540 2328863 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso2g0221 Myb_DNA-binding 3.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0221 - - gmx:778178 515.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0332 1 4138215 4140590 Gso2g0221 2 2326540 2328863 GST
Gso2g0221 2 2326540 2328863 Gso18g1046 18 17732634 17735714 PCT
Gso18g1046 18 17732634 17735714 Gso2g0221 2 2326540 2328863 PCT