Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0215 ATGGATCCGGCGGCGATAATGAACGGCGCTGCCAACACGACGTCGTTTCACCTGTCAGAGATCTGGCAGTTCCCGCCTCCCAACTCGCCAGATGCACTGGGGCTCAGGAGGCCCCACTTCGCCCACGGCAGCTTTGCGGACTTTGCCCCGGGTCCGACCCGAGACGCTGACCCGGCCAGCATTGCCCACAAGAAGCCCCGCCACGCTGCCGGGGAGGAGGAGGAATCCGCTAAGGGCGCCTCCACCACCAATGCCGTGGATGAGGGTGGTGGTGGTGATGGAAAACGGATTAAGGCGAGTGAGAGTGGGGAAGGTGGAAGAGAAAACAGTTCAGGAAAGCCTGCGGAGCAAAGTGGTAAGCCACCTTCGGAGCCTCCAAAGCAAGACTACATTCATGTCAGAGCTAGAAGAGGTCAAGCTACTGATAGCCACAGTCTTGCAGAAAGAGCTAGACGGGAAAAGATCAGTGAGAGGATGAAAACTCTTCAGGATTTAGTCCCGGGTTGTAATAAGGTTATTGGGAAAGCATTGGTCCTTGATGAGATAATTAATTATATCCAATCGCTTCAGCGTCAAGCAGAGTTTTTGTCAATGAAGCTTGAAGCAGTAAATTCAAGAATGGAGTCCGGAATTGAAGTGTTTCCTCCAAAAGATTTTGATCAGCAAACTTTCGATACAACTGACATGCCATTCGCTTCTCAAGCTACAAGAGAGTATAGCCGAGGTTCATCATCCGAATGGTTACATATGCAGGTTGGAGGTGGTTTTGAAAGAGCTACGTAG 783 0.5147 MDPAAIMNGAANTTSFHLSEIWQFPPPNSPDALGLRRPHFAHGSFADFAPGPTRDADPASIAHKKPRHAAGEEEESAKGASTTNAVDEGGGGDGKRIKASESGEGGRENSSGKPAEQSGKPPSEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKTLQDLVPGCNKVIGKALVLDEIINYIQSLQRQAEFLSMKLEAVNSRMESGIEVFPPKDFDQQTFDTTDMPFASQATREYSRGSSSEWLHMQVGGGFERAT* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0215 260 MobiDBLite consensus disorder prediction 58 75 - -
Gso2g0215 260 Coils Coil 186 206 - -
Gso2g0215 260 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 139 189 IPR011598 GO:0046983
Gso2g0215 260 Gene3D - 136 212 IPR036638 GO:0046983
Gso2g0215 260 MobiDBLite consensus disorder prediction 42 128 - -
Gso2g0215 260 SMART finulus 145 195 IPR011598 GO:0046983
Gso2g0215 260 CDD bHLH_AtBPE_like 129 214 - -
Gso2g0215 260 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 260 IPR024097 GO:0006355
Gso2g0215 260 Pfam Helix-loop-helix DNA-binding domain 143 190 IPR011598 GO:0046983
Gso2g0215 260 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 137 207 IPR036638 GO:0046983
Gso2g0215 260 PANTHER BNAC05G07950D PROTEIN 1 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0215 Gso-Chr2 2260843 2264349 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0215 1 244 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 51.515 1.82e-68 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso2g0215 HLH 1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0215 - - gmx:100782014 511.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0338 1 4241191 4245041 Gso2g0215 2 2260843 2264349 GST
Gso2g0215 2 2260843 2264349 Gso17g0127 17 1176670 1178209 PCT
Gso17g0127 17 1176670 1178209 Gso2g0215 2 2260843 2264349 PCT