Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0214 ATGGATCCGGCGGCCATGATGAACGCCGCCGCCAACACGGCGTCATATCACCTGTCAGAGATCTGGCACTTCCCGCCTCCCAACGCGCCAGACGCGCTGGGCCTCAGGAGGGCCCACTTCGCCCCGGGTCCGACCCGACATGCCGTCCCGGGTCGCGACCTGGCTAGCATCGCCCCCAAGAAGCGCCGCCAAGCCGAGGAGGAGGAGGTGGAATCCACTAGGGGCGCTTCCACCACCAATGCCGTGGATGAGGGTTGTGGTGATGGAAAACGGGTTAAGACGAGTGAGAGTGGGAAAGGTGAAGGAGAAAGCTGTTCAGGAAAGCCTGCGAAGCAAAGCGGTAAGCCACCTTCGGAGCCTCCAAAGCAAGACTACATTCATGTCAGAGCTAGAAGAGGTCAAGCTACTGATAGCCACAGTCTTGCAGAAAGAGCTAGACGGGAGAAGATCAGTGAAAGGATGAAAATTCTTCAGGATTTAGTCCCGGGTTGTAATAAGGTTATTGGGAAAGCATTGGTCCTTGATGAGATAATTAATTATATCCAATCACTTCAGCGGCAAGTAGAGTTTTTGTCAATGAAGCTTGAAGCAGTAAATTCAAGAATTGCCCCCGGAATCGAAGTGTTTCCTCCGAAAGATTTTGATCAGCAAACATTCGATACAACTGGCATGCCATTCGCTTCTCAAGCTACAAGAGACTATAGCCGAGGCTCATCACCGGAGTGGTTACATATGCAGGTTGGAGATGGTTTTGAAAGAGCAACGTAG 768 0.5221 MDPAAMMNAAANTASYHLSEIWHFPPPNAPDALGLRRAHFAPGPTRHAVPGRDLASIAPKKRRQAEEEEVESTRGASTTNAVDEGCGDGKRVKTSESGKGEGESCSGKPAKQSGKPPSEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRIAPGIEVFPPKDFDQQTFDTTGMPFASQATRDYSRGSSPEWLHMQVGDGFERAT* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0214 255 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 255 IPR024097 GO:0006355
Gso2g0214 255 Pfam Helix-loop-helix DNA-binding domain 138 185 IPR011598 GO:0046983
Gso2g0214 255 MobiDBLite consensus disorder prediction 56 73 - -
Gso2g0214 255 CDD bHLH_AtBPE_like 124 209 - -
Gso2g0214 255 SMART finulus 140 190 IPR011598 GO:0046983
Gso2g0214 255 MobiDBLite consensus disorder prediction 27 123 - -
Gso2g0214 255 Gene3D - 131 204 IPR036638 GO:0046983
Gso2g0214 255 Coils Coil 181 201 - -
Gso2g0214 255 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 132 202 IPR036638 GO:0046983
Gso2g0214 255 PANTHER BNAC05G07950D PROTEIN 1 255 - -
Gso2g0214 255 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 134 184 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0214 Gso-Chr2 2252519 2256350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0214 1 213 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 54.348 2.19e-68 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso2g0214 HLH 2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0214 - - gmx:100778795 509.605