Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0190 ATGAGTCGCAAGAGAGACAGGCAACCCTACTTTTCCCGCCACGACGCCGCCAAGCGCCGGCGCCCCTTGCCGGAGACCACGGAGGAGGAGAGGCCCACGACGAGGCCGGCGCCGCCGTGCGCGGTGGTCGTGATGGGCCTACCCCAGGACTGCTCCGTCCTCGATCTCAAGTCCCGATTCGAGATCTACGGGGCTATCTCCCGCATCCGCATCGACCGCGACGCCGTCGGCTACATCACCTACCGGACGAAGGACTCCGCCGACGCTTCTATCGCCGCCGACCTCGACCCCTCCTTCGGAATCACCGTTAACTCCAAAAAGGTTCGGGTGTTGTGGGCAACGGACCCTCTAGCCATGTGGAGGGAAGGAGTTGGTAATAGCAGGGACAAAAGCTCTATGTCAAAACTTGTGCGTGCTGAGGTACCCTTGAGCAAGCATGGAAGAGGTAATAGACTCTCTTCAGCCATAGGGAACACCAAACGTAGTGAGGATAGCTCAGGTAGCTCGGTTTTAGAAGTGCCTTTCAAGGGGAGAGAAATTGTTGCTTACGATGATATCCTCTAACTATGAAAATCTGGTATTCTCAAAACGGTGATGGAAGAACCGAACAAGACAGAGAACGAAGATGACAGGGACGAATCAGAACAACGAGTGTGGAGTTGGGGTGCTGGAACCGAGGGACAGTTAGGAACAAAGATTCTTCAGGATGAGCACTTCCCTCAACTCCTTCACCAATTCTCTCTCTCCTCCATCTCTTCCCTTGCCTGTGGCGGTGCTCATGTCATAGCCTTAACCTCTGCTGGAAAGGCACTATCATGGGGTAGGGGCAATTCTGGCCAACTGGGCCATGGGGAGGTTGTGAGTAACACTTTGTATCCAAAGGCTGTAACATCATTGGATGGCTATTTCATAACCCATGTCTCTGCTGGGTGGAGCCACTCTGGTTTTGTTTCAGATACTGGGTTTGTGTTCACTTGTGGGGATGGCTCCTTTGGTCAACTGGGGCATGGGGATAATGCCTCACACTGCTCTCCTGTCAAAGTGTCATGCTTTGTTGATCTGCATGTGGCACAGGTGGCATGTGGAATGCGCCATTCCCTTGTCTTGTTAAAAGATTGCTCAGGAAATCAAGTTTATGGATTTGGCTCTGGGAAGCGTGGTCAACTGGGTGTCAGCAACGATAGGGTCAAATCTGTTAATGTTCCTAAAGTTGTTAGTGGCTTTGAAGGTGTTGAAATCGTTGGAACTGCTGCCAATGGTGACCATAGTGCTGCAGTATCTGTTGATGGACATGTTTACACATGGGGAAGAGGCTTCAAGGGCTTTGAAGATGCTCATGTTCCTCAGTGCTTAAACTCTTCATTGAATTTTACCAAAGTTGCTCTGGGATGGAACCATGCTTTAGCTATGAGTGGTGAAGGGGAGGTTTATATGCTAGGTGGAAACCACCTTGGAGTGCTTAGTGATCTTCAGAATATAGGCCCTGCTAAGCATTTTCCTGATTTAAGAGAATTCAATTTGGAGAAAGTCCCTGGCCTTGATGGGACGAAGATTACTGATATTGCTGCCGGAGCTGAGCATTCTGTCATTGTCACAGAGCATGGAGAAATAAAGACATGGGGTTGGGGTGAGCATGGTCAACTTGGTTTAGGGGATACTCGCGACCAAACCAGTCCTGTTACAGTAAGTCTCGATTATGATCTGAATGAAGCTGCATCAATTAGAGTTTTCTGTGGAAGTGGGTTCACGTTTGCTGTAACCATGCCCTAG 1770 0.5023 MSRKRDRQPYFSRHDAAKRRRPLPETTEEERPTTRPAPPCAVVVMGLPQDCSVLDLKSRFEIYGAISRIRIDRDAVGYITYRTKDSADASIAADLDPSFGITVNSKKVRVLWATDPLAMWREGVGNSRDKSSMSKLVRAEVPLSKHGRGNRLSSAIGNTKRSEDSSGSSVLEVPFKGREIVAYDDIL*L*KSGILKTVMEEPNKTENEDDRDESEQRVWSWGAGTEGQLGTKILQDEHFPQLLHQFSLSSISSLACGGAHVIALTSAGKALSWGRGNSGQLGHGEVVSNTLYPKAVTSLDGYFITHVSAGWSHSGFVSDTGFVFTCGDGSFGQLGHGDNASHCSPVKVSCFVDLHVAQVACGMRHSLVLLKDCSGNQVYGFGSGKRGQLGVSNDRVKSVNVPKVVSGFEGVEIVGTAANGDHSAAVSVDGHVYTWGRGFKGFEDAHVPQCLNSSLNFTKVALGWNHALAMSGEGEVYMLGGNHLGVLSDLQNIGPAKHFPDLREFNLEKVPGLDGTKITDIAAGAEHSVIVTEHGEIKTWGWGEHGQLGLGDTRDQTSPVTVSLDYDLNEAASIRVFCGSGFTFAVTMP* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0190 587 MobiDBLite consensus disorder prediction 1 37 - -
Gso2g0190 587 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 428 471 IPR000408 -
Gso2g0190 587 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 92 IPR000504 GO:0003723
Gso2g0190 587 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 472 532 IPR000408 -
Gso2g0190 587 Pfam Regulator of chromosome condensation (RCC1) repeat 266 314 IPR000408 -
Gso2g0190 587 Pfam Regulator of chromosome condensation (RCC1) repeat 375 424 IPR000408 -
Gso2g0190 587 Pfam Regulator of chromosome condensation (RCC1) repeat 319 367 IPR000408 -
Gso2g0190 587 Pfam Regulator of chromosome condensation (RCC1) repeat 215 262 IPR000408 -
Gso2g0190 587 Pfam Regulator of chromosome condensation (RCC1) repeat 535 584 IPR000408 -
Gso2g0190 587 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 374 427 IPR000408 -
Gso2g0190 587 SUPERFAMILY RNA-binding domain, RBD 30 121 IPR035979 GO:0003676
Gso2g0190 587 PANTHER OS01G0777800 PROTEIN 216 581 - -
Gso2g0190 587 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 214 265 IPR000408 -
Gso2g0190 587 Gene3D - 12 167 IPR012677 -
Gso2g0190 587 PRINTS Chromosome condensation regulator RCC1 signature 461 479 IPR000408 -
Gso2g0190 587 PRINTS Chromosome condensation regulator RCC1 signature 249 262 IPR000408 -
Gso2g0190 587 PRINTS Chromosome condensation regulator RCC1 signature 268 284 IPR000408 -
Gso2g0190 587 PRINTS Chromosome condensation regulator RCC1 signature 528 549 IPR000408 -
Gso2g0190 587 PRINTS Chromosome condensation regulator RCC1 signature 215 231 IPR000408 -
Gso2g0190 587 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 357 367 IPR000408 -
Gso2g0190 587 Gene3D - 198 440 IPR009091 -
Gso2g0190 587 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 266 318 IPR000408 -
Gso2g0190 587 MobiDBLite consensus disorder prediction 1 32 - -
Gso2g0190 587 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 115 IPR000504 GO:0003723
Gso2g0190 587 MobiDBLite consensus disorder prediction 148 168 - -
Gso2g0190 587 SMART rrm1_1 41 111 IPR000504 GO:0003723
Gso2g0190 587 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 319 370 IPR000408 -
Gso2g0190 587 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 216 581 - -
Gso2g0190 587 Gene3D - 441 586 IPR009091 -
Gso2g0190 587 CDD RRM_SF 42 110 - -
Gso2g0190 587 MobiDBLite consensus disorder prediction 151 168 - -
Gso2g0190 587 SUPERFAMILY RCC1/BLIP-II 214 392 IPR009091 -
Gso2g0190 587 SUPERFAMILY RCC1/BLIP-II 372 585 IPR009091 -
Gso2g0190 587 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 533 587 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0190 Gso-Chr2 2018388 2025206 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0190 1 187 Homeobox Transcription Factor Family AT1G27050 52.174 1.90e-55 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0190 - - gmx:100793672 1031.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0190 2 2018388 2025206 Gso2g0190 2 2018388 2025206 ECH