Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0189 ATGGCGAGTGGCAAGCTTTATGCGGGTTCAAACATGTCACTTCTCCTCCAAAACGAAAGGCTCCCTTGCTCCTCTGAAGTCCTTGAGTCTCTTTGGGCTCAGACCTCTAACCCTGCTTCCTTCCAAGGTTCAAAACCCGTGGTTGATTTTGAGAATGTAAGTGGGAGCAGGATGACGGATAGGCCTTTCTTTCAAGCGTTGGAGAAGGAAGAGAACTGTGATGAGGATTACGAGGGGTGTTTCCACCAACCGGGGAAGAAAAGGAGGCTCACAAGCGAACAAGTTCAGTTCCTTGAAAGGAACTTTGAGGTAGAGAACAAGCTTGAACCCGAAAGGAAAGTCCAACTTGCAAAAGAGCTTGGCTTGCAGCCAAGGCAAGTTGCTATATGGTTCCAAAACCGAAGGGCAAGGTTCAAGACCAAGCAGCTAGAAAAAGACTATGGCGTGTTGAAAGCTAGTTATGACAGACTCAAAAGTGACTATGAAAGTCTTGTTCAAGAGAATGACAAGTTAAAAGCAGAGGTGAATTCTCTGGAGAGCAAATTGATTCTTAGAGATAAAGAGAAGGAGGAGAATTCGGATGACAAGTCATCTCCTGATGATGCTGTCAATTCTTCTTCACCCCACAACAACAAGGAGCCTATGGATTTATTAATTATTTCAAAAAATGCAACAACAACAACAACATCTGAAAATGGGACCAAAGTGTTGTCACCACTCCCACTCCCTATTATGGTAACATGCTGCAAGCAAGAAGATGCCAACTCAGCCAAAAGTGATGTCCTTGATTCGGATAGCCCACATTGCACTTCATTCGTGGAGCCTGCTGATTCCTCTCATGCCTTTGAACCAGAAGACCACTCAGAAGACTTCTCCCAAGATGAAGAGGATAACCTTAGTGAAAACCTTTTGATGACCTTCCCTTCTTCTTGTTGCTTACCTAAGGTTGAAGAACACTGCTATGACGGCCCTCCTGAAAACTCTTGTAATTTTGGCTTCCAGGTTGAGGATCAAACCTTCTGTTTCTGGCCCTATTGA 1038 0.4451 MASGKLYAGSNMSLLLQNERLPCSSEVLESLWAQTSNPASFQGSKPVVDFENVSGSRMTDRPFFQALEKEENCDEDYEGCFHQPGKKRRLTSEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYGVLKASYDRLKSDYESLVQENDKLKAEVNSLESKLILRDKEKEENSDDKSSPDDAVNSSSPHNNKEPMDLLIISKNATTTTTSENGTKVLSPLPLPIMVTCCKQEDANSAKSDVLDSDSPHCTSFVEPADSSHAFEPEDHSEDFSQDEEDNLSENLLMTFPSSCCLPKVEEHCYDGPPENSCNFGFQVEDQTFCFWPY* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0189 345 MobiDBLite consensus disorder prediction 183 198 - -
Gso2g0189 345 MobiDBLite consensus disorder prediction 259 296 - -
Gso2g0189 345 Pfam Homeodomain 86 139 IPR001356 GO:0003677
Gso2g0189 345 MobiDBLite consensus disorder prediction 183 215 - -
Gso2g0189 345 SUPERFAMILY Homeodomain-like 77 143 IPR009057 -
Gso2g0189 345 PRINTS Lambda-repressor HTH signature 112 121 IPR000047 GO:0003677
Gso2g0189 345 PRINTS Lambda-repressor HTH signature 121 137 IPR000047 GO:0003677
Gso2g0189 345 PANTHER HOMEOBOX LEUCINE ZIPPER FAMILY PROTEIN 1 345 - -
Gso2g0189 345 SMART HOX_1 83 145 IPR001356 GO:0003677
Gso2g0189 345 Coils Coil 154 181 - -
Gso2g0189 345 Gene3D - 136 184 - -
Gso2g0189 345 ProSitePatterns 'Homeobox' domain signature. 116 139 IPR017970 GO:0000981|GO:0006355
Gso2g0189 345 Gene3D - 89 135 - -
Gso2g0189 345 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 345 IPR045224 GO:0003700
Gso2g0189 345 CDD homeodomain 84 142 IPR001356 GO:0003677
Gso2g0189 345 Pfam Homeobox associated leucine zipper 141 182 IPR003106 GO:0006355|GO:0043565
Gso2g0189 345 ProSiteProfiles 'Homeobox' domain profile. 81 141 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0189 Gso-Chr2 1996706 1998918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0189 43 182 Homeobox Transcription Factor Family AT3G01470 57.143 1.85e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso2g0189 Homeodomain 4.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0189 - K09338 gmx:547565 582.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0189 2 1996706 1998918 Gso2g0189 2 1996706 1998918 ECH