Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso2g0186 | ATGCCGATGGAGCTGGAGCAGGAGCTAGGTTCAACAACAATCCAGCGTTCCTTCGACGCGCGCTACACCCGCCACGCGCGCGACTCGCTCGGCGAATTGCCTGACAGCTTCACCATCACCGACCCCTCCATCCCCGGCCACCCCATCGTCTTCGCCAGCCCGGGCTTCCTCAAGCTCACGGGCTACTCCCTCCGCGAAGTCCTGGGCCGGCCCGCAGCCATCTTCCAGGGCCCACGAACATCCCGAAAATCCGTAATCGAAATTCGCGAGGCCGTTAGAGAGGAGCGAAACGCGCAGGTCGTTTTACTCAACTACCGCAGAGACGGTACGCCGTTTTGGATGCTTTTTCGTGTTTCCCCTGTTTTCAGCAGCGACGGTGGCGCCGTCGTGCACTTTGTTGCCGTACAGGTACCGCTTCAGAAAAAAGAAGGGTCCGGAGTGAGGGATTTCGGGTTCGGGTGCTGTCGGAAGGAAGTGTGCGTGGATTCGTTGGCGGAGATTGATCGCGTTTGTTCATTGGAGCAAGTGCTCGAACCTGATGTCAGAGCTTTGTGGGATGCAGAAGTGGAGAGAGAAGAGCCGTGTGAGGCGAGTGATGATGAGAAGCGAAGTGCTGTTACTGCCATGGACAGTATATTTTCTGTGCTAACCCATTACAGTGAGGCCACAGGGAGATTGGTGTGTAGAAAGAGGTCCAGCATTCCTGACGTGGGTCTTTTAAGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTAACTAATCCGCATTTACCAGACATGCCTATTGTTTATGCTAGTGACGCCTTCTTGAAATTGACAGGTTATGCAAAAAATGAAGTTTTGGGCCACAACTGTAGATTTTTAGGTGGAACAGATACCGATACCTCGACTTTACATCTGATAAGGGAAAGCATTAAAACAGAACAACCATGCACAGTACGTATTTTGAATTACAGGAAGGACAAAAGCTCATTTTGGAATTTTCTTCATATCTCACCCGTTCGTGATGCTTCTGGCAAGGTTGCATACTTTGTGGGAGTTCAAATAGAAGACAACAATAAAAACGATGATAGCCATTGTTTGAGTCCTGAGAAGAGACAACTTAGTGTGGTTGGTGTAGTCAAGGTTGCAGTGAGGAGTTTATCAATGACTGCGGGATCTTCTGAGTCGTAG | 1188 | 0.4975 | MPMELEQELGSTTIQRSFDARYTRHARDSLGELPDSFTITDPSIPGHPIVFASPGFLKLTGYSLREVLGRPAAIFQGPRTSRKSVIEIREAVREERNAQVVLLNYRRDGTPFWMLFRVSPVFSSDGGAVVHFVAVQVPLQKKEGSGVRDFGFGCCRKEVCVDSLAEIDRVCSLEQVLEPDVRALWDAEVEREEPCEASDDEKRSAVTAMDSIFSVLTHYSEATGRLVCRKRSSIPDVGLLSTSLIISLGRIKQSFVLTNPHLPDMPIVYASDAFLKLTGYAKNEVLGHNCRFLGGTDTDTSTLHLIRESIKTEQPCTVRILNYRKDKSSFWNFLHISPVRDASGKVAYFVGVQIEDNNKNDDSHCLSPEKRQLSVVGVVKVAVRSLSMTAGSSES* | 396 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso2g0186 | 395 | SMART | pac_2 | 99 | 142 | IPR001610 | - | |
| Gso2g0186 | 395 | SMART | pac_2 | 317 | 359 | IPR001610 | - | |
| Gso2g0186 | 395 | CDD | PAS | 263 | 352 | IPR000014 | - | |
| Gso2g0186 | 395 | ProSiteProfiles | PAS repeat profile. | 49 | 70 | IPR000014 | - | |
| Gso2g0186 | 395 | Pfam | PAS domain | 254 | 353 | IPR000014 | - | |
| Gso2g0186 | 395 | Pfam | PAS domain | 35 | 136 | IPR000014 | - | |
| Gso2g0186 | 395 | ProSiteProfiles | PAS repeat profile. | 267 | 289 | IPR000014 | - | |
| Gso2g0186 | 395 | CDD | PAS | 33 | 127 | IPR000014 | - | |
| Gso2g0186 | 395 | Gene3D | PAS domain | 36 | 218 | - | - | |
| Gso2g0186 | 395 | Gene3D | PAS domain | 254 | 392 | - | - | |
| Gso2g0186 | 395 | TIGRFAM | sensory_box: PAS domain S-box protein | 267 | 352 | IPR000014 | - | |
| Gso2g0186 | 395 | TIGRFAM | sensory_box: PAS domain S-box protein | 49 | 130 | IPR000014 | - | |
| Gso2g0186 | 395 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 34 | 134 | IPR035965 | - | |
| Gso2g0186 | 395 | SMART | pas_2 | 24 | 93 | IPR000014 | - | |
| Gso2g0186 | 395 | SMART | pas_2 | 242 | 315 | IPR000014 | - | |
| Gso2g0186 | 395 | ProSiteProfiles | PAC domain profile. | 314 | 368 | IPR000700 | - | |
| Gso2g0186 | 395 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 257 | 353 | IPR035965 | - | |
| Gso2g0186 | 395 | PANTHER | PROTEIN TWIN LOV 1 | 14 | 390 | - | - | |
| Gso2g0186 | 395 | PANTHER | PROTEIN TWIN LOV 1 | 14 | 390 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso2g0186 | Gso-Chr2 | 1935390 | 1939481 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gso2g0186 | 21 | 374 | AGC Kinase Gene Family | AT5G58140 | 31.899 | 2.55e-60 | 208 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso2g0186 | - | - | gmx:100799855 | 754.977 |
Event-related genes