Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0177 ATGGCAAAAATGCATAATTTCTTCCTTTTAACGTGTTTGATAGTCATCATACCTACCTTGCATGCCAATGTCAAGGAGGATGAAATATATTGGAAGAGGCAAAGTCAAATACTTAATGATTCATATTGGAAGCAAAAAGCATCAGTTGCAGAAAAAGAGAACAAACAAGCTTATACTTCTGACCCATATTCACTCACCAAGAACTTGACCTATAGTGTTAGCGAAATCATAGTTGGTGAGCAGAATGGAAGAAGGAATTTGAAGGGAAAAGGTGGTAATTGTATGGCAACAAACCCAATCGACAGGTGCTGGAGGTGTGACCCCAATTGGGCAAACAACCGAAAGAAGCTTGCAAATTGTGTGCAAGGTTTTGGCAGAAACACTGTTGGTGGAAAGAATGGTCCATTCTATGTGGTGACCAGTAATTTAGATAATGACATGGTGAATCCTGTTCCTGGTACCCTTAGGCATGCAGTTACAAGAACCGGACCCTTGTGGATCATCTTTGCTCATAGCATGAAGATTAGGCTCAATCAGGAGCTCATTATGGCAAGTGACAAGACCATTGACGGAAGAGGAGTTGATGTCTACCTTGCTGGTGGGGCTGGTATTACCATCCAGTTCATCAAGAATGTGATCATCCATGGAGTCAAGATTTTTGACATTCAGGTTGGTAATGGTGGACTTATTATAGATTCTGAGAACCACTATGGTTTGAGGACTATGAGTGATGGAGATGGCATTTCCATCTTTGGCTCTAGCAATATTTGGATTGACCATGTTTCCATGAGAAAATGCAAAGATGGATTGATAGATGCTATTCAGGGTTCCACTGCTATTACCATCTCCAATAGCCATTTCACAGACCACAATGAGGTGATGTTGTTTGGTGCTAGTGACAGCTATGATGGTGATACGATAATGCAAATCACATTGGCATTCAACCACTTTGGCAAGAGATTAGTCCAAAGGATGCCAAGGTGCAGATATGGTTTTGTCCATGTGGTTAATAATGACTACACTCATTGGGAAATGTATGCCATTGGTGGTAGCAAGCATCCTACCATTATTAGTGAGGGCAACAGATTCATTGCCCCTGACAACATTAATGCTAAAGAGATAACAAAGAGGGAGTACTCACCAGAGCAAGAGTGGAAAAGCTGGCAATGGAGATCAATCAATGACGAGTACCTGAACGGAGGATTTTTCAGAGAAGGTGGTGCTCAACTAACAGACAGGCCATACTCAAGGCATGACATGATGACAGCAAGGCCTGGATCATACGTGGGAAGACTCACTCGTTATGCTGGAAGCCTTAAGTGCATGGTGGGAAAGCCTTGTTAA 1344 0.4219 MAKMHNFFLLTCLIVIIPTLHANVKEDEIYWKRQSQILNDSYWKQKASVAEKENKQAYTSDPYSLTKNLTYSVSEIIVGEQNGRRNLKGKGGNCMATNPIDRCWRCDPNWANNRKKLANCVQGFGRNTVGGKNGPFYVVTSNLDNDMVNPVPGTLRHAVTRTGPLWIIFAHSMKIRLNQELIMASDKTIDGRGVDVYLAGGAGITIQFIKNVIIHGVKIFDIQVGNGGLIIDSENHYGLRTMSDGDGISIFGSSNIWIDHVSMRKCKDGLIDAIQGSTAITISNSHFTDHNEVMLFGASDSYDGDTIMQITLAFNHFGKRLVQRMPRCRYGFVHVVNNDYTHWEMYAIGGSKHPTIISEGNRFIAPDNINAKEITKREYSPEQEWKSWQWRSINDEYLNGGFFREGGAQLTDRPYSRHDMMTARPGSYVGRLTRYAGSLKCMVGKPC* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0177 447 Pfam Pectate lyase, N terminus 40 87 IPR007524 GO:0030570
Gso2g0177 447 PRINTS Pollen allergen Amb family signature 120 137 IPR018082 -
Gso2g0177 447 PRINTS Pollen allergen Amb family signature 144 169 IPR018082 -
Gso2g0177 447 PRINTS Pollen allergen Amb family signature 180 196 IPR018082 -
Gso2g0177 447 PRINTS Pollen allergen Amb family signature 244 265 IPR018082 -
Gso2g0177 447 PRINTS Pollen allergen Amb family signature 324 343 IPR018082 -
Gso2g0177 447 PRINTS Pollen allergen Amb family signature 346 365 IPR018082 -
Gso2g0177 447 PRINTS Pollen allergen Amb family signature 388 412 IPR018082 -
Gso2g0177 447 PRINTS Pollen allergen Amb family signature 418 441 IPR018082 -
Gso2g0177 447 SMART amb_all 172 369 IPR002022 -
Gso2g0177 447 Gene3D - 97 440 IPR012334 -
Gso2g0177 447 PANTHER PECTATE LYASE 5 447 - -
Gso2g0177 447 PANTHER PECTATE LYASE 18-RELATED 5 447 IPR045032 GO:0030570
Gso2g0177 447 Pfam Pectate lyase 184 363 IPR002022 -
Gso2g0177 447 SUPERFAMILY Pectin lyase-like 98 437 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0177 Gso-Chr2 1851511 1854363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0177 8 447 Polysaccharide Lyase AT1G14420 56.550 0.0 519
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0177 K01728 - gmx:100810857 917.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0177 2 1851511 1854363 Gso2g0177 2 1851511 1854363 ECH