Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0175 ATGGGAACTCTAATTATCCTTGGTGCAAGGGATTCTTGGGAATTTTCTCATGAGACTGTTAAGTCGAAAAGAAAAGTTTTGAAGGTGGAGCCACTTCTGGATGCTACTGGCCACTTATTTAGCTTAAGCGTTCTGAAAAAACCTGCGAACATGGAGGGAATTCAGGAAAGCATCTTTCTCCCTGTTACAAGGGCAGACCTAGAAGTTTTAAGGTCACTTTTCAATTGTATCATGCCATACCTTCTAGGTTGGAATGCCTTTGGAAACTCCATAAAGCCAGAGGTATATAGTCAAGTGAATAGTACCAACCCCAGATATGGAGCAGACAATGAATGGAACAGATAG 345 0.4145 MGTLIILGARDSWEFSHETVKSKRKVLKVEPLLDATGHLFSLSVLKKPANMEGIQESIFLPVTRADLEVLRSLFNCIMPYLLGWNAFGNSIKPEVYSQVNSTNPRYGADNEWNR* 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0175 114 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 1 114 - -
Gso2g0175 114 SUPERFAMILY ssDNA-binding transcriptional regulator domain 1 114 IPR009044 GO:0003677|GO:0006355
Gso2g0175 114 Gene3D Transcriptional Coactivator Pc4; Chain A 1 94 IPR009044 GO:0003677|GO:0006355
Gso2g0175 114 Pfam Whirly transcription factor 1 73 IPR013742 GO:0003697|GO:0006355|GO:0006952
Gso2g0175 114 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 1 114 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0175 Gso-Chr2 1834267 1839212 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0175 1 114 Whirly Transcription Factor Family AT1G14410 55.000 2.80e-40 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Gso2g0175 Whirly 2.4e-12 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0175 - - gmx:106795219 234.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0175 2 1834267 1839212 Gso2g0175 2 1834267 1839212 ECH