Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0174 ATGGAAGATAATAACTTCTTGGATTCTAATGGTGATGAAGAGATCAATGTGAAGAATCAAGATCTTGAATCAGCTAAAGGGGAAACAATGGGAGAGGCTAGAGAAGAAAACAAGATGTTAGAATTCTTTGAGATTCTTCAACAAGATAAACCTGAAGATGCTACAAATGCTAAAGGTGTGTTTAGCCATGATGAGGAAAATGAAGAAAGTGAACTTGTGTCACTTTCTCTTGGGATATCAATATCAAAAGGCAAGCCTACCAAGGATGAGAAAATATTGAAAAACAAAAATGGAATTGAAAAGACAGAAGATGAGGATGTGCATAATAAAAGACTTGTGCTTGGGTTAGATATCAATTTGGACCCTGTAGATCAAGATGAATTGACTGCAAATAATTCCACCACTGAAAGTAGCTTTGTTGGTGAGAGAGGGAAGGAAGAGGAACCAACTGAGATGTGGCCACCCAGTAAAGTTTTGAAGACAATGAAAAGTGTGGATAAAAGTGAAGTTTCTCAACATGATCAGCCCAAGAAGACTAGGGTTTCTATTAGAGCCAGATGTGATACCCAAACGATGAATGATGGGTGCCATTGGAGAAAATATGGACAGAAAATGGCCAAAGGAAATCCATGCCCCCGAGCTTACTATCGATGCACTGCTTCTCCATCTTGTCCTGTAAGAAAACAGGTGCAAAGATGTGCTGAAGACATGTCCATATTGATTACCACCTATGAAGGAACTCACAATCACCCTCTTCCTATGTCAGCCACTGCAATGGCCTGCACAACTTCTGCTGCAGCTTCCATGCTCCAATCTCCCTCATTGAGTTCACAACATGGATTAGTTGATTCAGCTATATCCTCCATCATCAACTCTAGTGCTCCTTATTACAACCCTAATAATGCTCTAAACTTCTCTACACACCAAGTTTCAAGACCACAACAATTCTACTTCCCCAACTCATCCATTTCAACCTTGAATTCTCACCCCACAATCACTTTAGATCTTACAACACCTCCAACTTCTTCCTCAAACTCAAGCTTCACTTGCATGCCAAAATACTCATCAACAAACCTTAACTTTTCCTCAGGTTTCTCTCCTCTGCATTCTAGCATGCCGCAATCACCTTGGAACAGTTATAGTGGTTACTTCAACTCTGGAACACTTTCTCAAAATAGACACCATGGTGGTAATTACATGTTAAACACGGGAAATCAAAATCAACCACATTCTCTAGGGCATCTCCATCAACCTATTTACATGAGCAACAATAGTACCATTTCTCAGCATTCTTTCCCTAATCCCATTGTTGCTGCAACTGAGGCAATAATCACAAGCAACCCAAAATTTCAATCAGCACTAGCAACTGCTCTCACAGCATATGTTGGCAATGAAGCTAGTGGTGGTAGGTTAAGAGAAAATCATGTTCTTGAGAATGCAGAACTGATGAACTTAAAGCTGCTACGCAGTGAAAATAGTATAGGAAACTCAAGTATATTTCCACTACCACTACCGGAGCAATGGAAGTGA 1530 0.4007 MEDNNFLDSNGDEEINVKNQDLESAKGETMGEAREENKMLEFFEILQQDKPEDATNAKGVFSHDEENEESELVSLSLGISISKGKPTKDEKILKNKNGIEKTEDEDVHNKRLVLGLDINLDPVDQDELTANNSTTESSFVGERGKEEEPTEMWPPSKVLKTMKSVDKSEVSQHDQPKKTRVSIRARCDTQTMNDGCHWRKYGQKMAKGNPCPRAYYRCTASPSCPVRKQVQRCAEDMSILITTYEGTHNHPLPMSATAMACTTSAAASMLQSPSLSSQHGLVDSAISSIINSSAPYYNPNNALNFSTHQVSRPQQFYFPNSSISTLNSHPTITLDLTTPPTSSSNSSFTCMPKYSSTNLNFSSGFSPLHSSMPQSPWNSYSGYFNSGTLSQNRHHGGNYMLNTGNQNQPHSLGHLHQPIYMSNNSTISQHSFPNPIVAATEAIITSNPKFQSALATALTAYVGNEASGGRLRENHVLENAELMNLKLLRSENSIGNSSIFPLPLPEQWK* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0174 509 MobiDBLite consensus disorder prediction 49 73 - -
Gso2g0174 509 Pfam WRKY DNA -binding domain 193 251 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso2g0174 509 Gene3D WRKY domain 177 254 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso2g0174 509 PANTHER WRKY TRANSCRIPTION FACTOR 72B 5 509 - -
Gso2g0174 509 MobiDBLite consensus disorder prediction 127 152 - -
Gso2g0174 509 SUPERFAMILY WRKY DNA-binding domain 185 253 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso2g0174 509 ProSiteProfiles WRKY domain profile. 187 253 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso2g0174 509 SMART WRKY_cls 192 252 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso2g0174 509 MobiDBLite consensus disorder prediction 1 33 - -
Gso2g0174 509 MobiDBLite consensus disorder prediction 14 33 - -
Gso2g0174 509 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 5 509 IPR044810 GO:0003700
Gso2g0174 509 MobiDBLite consensus disorder prediction 56 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0174 Gso-Chr2 1817996 1826164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0174 30 339 WRKY Transcription Factor Family AT5G15130 41.329 9.06e-59 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso2g0174 WRKY 4.7e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0174 - - gmx:100809801 973.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0174 2 1817996 1826164 Gso2g0174 2 1817996 1826164 ECH
Gso2g0174 2 1817996 1826164 Gso6g1605 6 16793083 16798205 ECH
Gso2g0174 2 1817996 1826164 Gso19g0180 19 2236646 2240042 ECH