Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0170 ATGGACCAGATCCTATTCACAACAGTTGCAGAATTGCCGCAGCAAAGGGTGTACGTGGGTTACTCCGTTTACACGAAGAAGGGCATGCTCACCGTGATTCCTAGACCTCCGGAATTTGAATCGAAAAGTTCTGGGGCGTTCAAAGTGTCCAAGGAAGGTTATGTTGTGCTCCAGTTTGCTCCCTCAGTTGGTGCTGATGAGCCCATATATGATTGGAACCACAAGCAGACATTCTCACTATCAGTGAGTGAAATGGGAACTCTAATTATCCTTGGTGCAAGGGATTCTTGGGAATTTTCTCATGAGACTGTTAAGTTGAAAAGCAGCAAAATTGATGTTAGAAAAGTTTTGAAGGTGGAGCCACTTCTGGATGCTACTGGCCACTTATTTAGCTTAAGGGTTCTGAAAAAGCCTGCGAACATGGAGGGAATTCAGAAAAGCATCTTTCTCCCTGTTACAAGGGCAGATCTAGAAGTTTTAAGGTCACTTTTCAATTATATCATGCCATACCTTCTAGGTTGGAATGCCTTTGGAAACTCCATAAAGCCAGAGGTATATAGTCAAGTGAATAGTACTAACCCCAGATATGGAGCAGACAATGAATGGAACAGATAG 615 0.4309 MDQILFTTVAELPQQRVYVGYSVYTKKGMLTVIPRPPEFESKSSGAFKVSKEGYVVLQFAPSVGADEPIYDWNHKQTFSLSVSEMGTLIILGARDSWEFSHETVKLKSSKIDVRKVLKVEPLLDATGHLFSLRVLKKPANMEGIQKSIFLPVTRADLEVLRSLFNYIMPYLLGWNAFGNSIKPEVYSQVNSTNPRYGADNEWNR* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0170 204 Pfam Whirly transcription factor 23 163 IPR013742 GO:0003697|GO:0006355|GO:0006952
Gso2g0170 204 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 12 204 IPR013742 GO:0003697|GO:0006355|GO:0006952
Gso2g0170 204 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 12 204 - -
Gso2g0170 204 Gene3D Transcriptional Coactivator Pc4; Chain A 9 192 IPR009044 GO:0003677|GO:0006355
Gso2g0170 204 SUPERFAMILY ssDNA-binding transcriptional regulator domain 15 204 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0170 Gso-Chr2 1796289 1803160 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0170 10 204 Whirly Transcription Factor Family AT1G14410 55.897 8.90e-73 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Gso2g0170 Whirly 7.8e-42 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0170 - - gmx:100775220 394.43