Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0165 ATGAAGAAGCAGCAGCAGCAGGAGAAACATAAGAAGCAAATGGTCAATGAAGAATCTAAGAAGAAGGAGCGTCACATTGTGACGTGGACTCAAGAGGAAGATGACATACTGAGGGAGCAGATTGGTGTACATGGAACTGAAAATTGGGCAATTATTGCTTCTAAATTCAAGGACAAAACAACAAGACAGTGCAGAAGAAGATGGTACACTTATTTGAATTCCGATTTCAAGAAAGGAGGATGGTCACCAGAGGAAGACATGCTTTTATGTGAGGCTCAAAAAATATTTGGTAACAGGTGGACAGAAATAGCAAAGGTGGTTTCAGGCAGAACGGATAACGCTGTGAAAAACCGTTTCTCCACATTGTGCAAAAAGAGAGCAAAATATGAAGCCTTAGTAAAAGAGAACAGCACTTCATACATCAATTCAAATAACAAAAGGATTTTTCTCCAGCACGGGTGTGATACAGATGTAGCATCAGAAACTGCAATTAAGAAGATGAGGAGGTCACATATCCCTGATGCCGCAGAGAAGATCAACTTTGGAGACAGATCACATAAACAAAATGGGATTCCATTAAATGAGCAATCAAGAGCCCCATTTGCGGTTTTAGCTCAAAACACTCACAATGTCAACTTGCCAGACCAGCATCATGTCTGCAATTTGAAATTTAGTGATTATGCTGAAAATAACAAGATTCAAGGAACATTCCTTAAAAAGGATGACCCAAAGATAAACGCATTGATGCAACAAGCAGAGTTATTAAGTTCACTAGCTCTAAAAGTAGATGCAGAGAATATGGACCAAAGTCTTGAAAATGCATGGAAGGTTCTTCAAGAATTTCTGAACCGAACCAAAGAGTCAGACATTCCTAGATATAAGATTCCAGATTTACAACTTGTAGATCTAAAAGAGTTATTGGCGGACTTAAAGAGCAGTAGTGAGGAAATCCAGCCATGCTGGAGGCAAATGGAACTATATGAAGACTCTCCAGGCAGTTCGGAATACAGTACAGGATCAACTCTCCTGCCTCATTCAGCTGGTGAGGATTTGGAACACTCACTGCATCAGGATATTGGAACCGAACTGAATATACAAATTGAAGATTCAGAAGGAGTTAGGGGATGTGACCAAGGGGTTCTTTCTAGTGCAACTCTGGATCAAGATTTATTCCCATCTTGTGAGGAACAGATAAACAATGATGCAATTGTTTCTGCCTTATCAAGTTCAGCGGAGTTCAGTTCACCTCTTCAAGTTACCCCTCTGTTTAGATCCTTAGCTGCTGGAATTCCTAGCCCACAATTTTCAGAAAGTGAAAGGAGCTTCCTTATGAAAACACTCGGAATGGAGTCTCCGTCGCTCAATCCAAGTGTCAACCCCTCACAACCGCCACTCTGCAAAAGAGCCCTCCTAATCTGA 1419 0.4094 MKKQQQQEKHKKQMVNEESKKKERHIVTWTQEEDDILREQIGVHGTENWAIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALVKENSTSYINSNNKRIFLQHGCDTDVASETAIKKMRRSHIPDAAEKINFGDRSHKQNGIPLNEQSRAPFAVLAQNTHNVNLPDQHHVCNLKFSDYAENNKIQGTFLKKDDPKINALMQQAELLSSLALKVDAENMDQSLENAWKVLQEFLNRTKESDIPRYKIPDLQLVDLKELLADLKSSSEEIQPCWRQMELYEDSPGSSEYSTGSTLLPHSAGEDLEHSLHQDIGTELNIQIEDSEGVRGCDQGVLSSATLDQDLFPSCEEQINNDAIVSALSSSAEFSSPLQVTPLFRSLAAGIPSPQFSESERSFLMKTLGMESPSLNPSVNPSQPPLCKRALLI* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0165 472 SUPERFAMILY Homeodomain-like 25 119 IPR009057 -
Gso2g0165 472 CDD SANT 81 122 IPR001005 -
Gso2g0165 472 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 76 IPR017930 -
Gso2g0165 472 MobiDBLite consensus disorder prediction 1 23 - -
Gso2g0165 472 CDD SANT 28 72 IPR001005 -
Gso2g0165 472 Gene3D - 80 148 - -
Gso2g0165 472 PANTHER TRANSCRIPTION FACTOR MYB88 9 471 - -
Gso2g0165 472 PANTHER MYB PROTEIN-RELATED 9 471 - -
Gso2g0165 472 SMART sant 25 74 IPR001005 -
Gso2g0165 472 SMART sant 77 125 IPR001005 -
Gso2g0165 472 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 127 IPR017930 -
Gso2g0165 472 ProSiteProfiles Myb-like domain profile. 73 123 IPR001005 -
Gso2g0165 472 ProSiteProfiles Myb-like domain profile. 29 72 IPR001005 -
Gso2g0165 472 Pfam Myb-like DNA-binding domain 29 89 - -
Gso2g0165 472 Gene3D - 15 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0165 Gso-Chr2 1698572 1705665 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0165 17 322 MYB Transcription Factor Family AT2G02820 63.578 1.40e-137 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso2g0165 Myb_DNA-bind_6 1.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0165 K09422 - gmx:100807667 937.562
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0165 2 1698572 1705665 Gso2g0165 2 1698572 1705665 ECH