Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0163 ATGTGGCATAAAACCTGCAATGAGATGGCTTTCTTCCCAGCAAATTTCATGCTCCAAACCCCTCACCATGATGATCACCATCATCATCAACCTCCACCTTCTCTCACCTCAATTCTACCAACGTGTGCACCTCAAGAATATCATGGGGGAGTGACCATTCTAGGAAAGAGATCCATGTCATTTTCATCAGGGATTGAGCATGGAGAAGAGGCCAATAATGCTGAGGAAGATTTGTCTGATGATGGATCACAAGCAGGGGAGAAGAAGAGAAGGCTCAACATGGAGCAAGTGAAGACACTTGAGAAGAGCTTTGAGTTGGGGAACAAGCTTGAGCCAGAGAGAAAAATGCAGCTTGCAAGAGCACTTGGCTTGCAACCAAGACAAATTGCTATATGGTTCCAGAATAGAAGGGCCAGGTGGAAGACCAAGCAGTTGGAGAAAGACTATGATGTTCTCAAAAGACAGTATGAAGCTGTCAAGTCAGATAATGATGCACTTCAAGCTCAGAACCAAAAACTTCAGGCTGAGATATTGGCACTGAAAAGTAGAGAGCCAACAGAATCCATAAACCTTAACAAAGAAACAGAAGGATCCTGCAGCAATAGAAGTGAGAACAGCTCAGACATCAAGTTGGATATCTCAAGGACACCAGCTATTGACAGTCCTCATTCTACACATCAGCAACAGCCAAGCAGACCCTTCTTTCCTCCTTCTTCTGTTAGGCCTGCAGGAGTTGCTCAGCTTTTCCAAACTTCTTCAAGACCAGAACTTGCATCATGCCAAAAGATTGACCAAATGGTCAAAGAAGAAAGCCTAAGCAACATGTTTTGTGGCATGGATGATCAATCTGGGTTTTGGCCTTGGTTGGAGCAGCAGCATTTCAATTGA 888 0.4426 MWHKTCNEMAFFPANFMLQTPHHDDHHHHQPPPSLTSILPTCAPQEYHGGVTILGKRSMSFSSGIEHGEEANNAEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQYEAVKSDNDALQAQNQKLQAEILALKSREPTESINLNKETEGSCSNRSENSSDIKLDISRTPAIDSPHSTHQQQPSRPFFPPSSVRPAGVAQLFQTSSRPELASCQKIDQMVKEESLSNMFCGMDDQSGFWPWLEQQHFN* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0163 295 MobiDBLite consensus disorder prediction 216 234 - -
Gso2g0163 295 Gene3D - 80 149 - -
Gso2g0163 295 ProSiteProfiles 'Homeobox' domain profile. 83 143 IPR001356 GO:0003677
Gso2g0163 295 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 7 295 - -
Gso2g0163 295 Coils Coil 135 183 - -
Gso2g0163 295 CDD homeodomain 88 144 IPR001356 GO:0003677
Gso2g0163 295 MobiDBLite consensus disorder prediction 64 92 - -
Gso2g0163 295 ProSitePatterns 'Homeobox' domain signature. 118 141 IPR017970 GO:0000981|GO:0006355
Gso2g0163 295 Pfam Homeobox associated leucine zipper 143 183 IPR003106 GO:0006355|GO:0043565
Gso2g0163 295 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 7 295 IPR045224 GO:0003700
Gso2g0163 295 MobiDBLite consensus disorder prediction 191 207 - -
Gso2g0163 295 SUPERFAMILY Homeodomain-like 79 145 IPR009057 -
Gso2g0163 295 SMART HOX_1 86 147 IPR001356 GO:0003677
Gso2g0163 295 MobiDBLite consensus disorder prediction 188 207 - -
Gso2g0163 295 PRINTS Lambda-repressor HTH signature 114 123 IPR000047 GO:0003677
Gso2g0163 295 PRINTS Lambda-repressor HTH signature 123 139 IPR000047 GO:0003677
Gso2g0163 295 MobiDBLite consensus disorder prediction 216 235 - -
Gso2g0163 295 Pfam Homeodomain 88 141 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0163 Gso-Chr2 1665324 1668069 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0163 5 295 Homeobox Transcription Factor Family AT1G69780 63.158 7.01e-123 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso2g0163 Homeodomain 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0163 K09338 - gmx:100808033 588.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0163 2 1665324 1668069 Gso2g0163 2 1665324 1668069 ECH