Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0158 ATGAAGAACAGATACTTGGCACATGCTCAACACCATCCTCCATTTCATGACTCTGCACTTCCAAAGAGAAAGTTGGATAAGAGTTGCACAGTTAAATCCCCAAGCCAATATGCCATGGATGCCATCATATCAAAAGGAAAATCTTCAAATAAACCACTAGTTGTTGTTGGTTGTTTCCCTCAAGGAAGTCGAGATTTGAAAGACCTCGAACGGATCAGCATAATTGGAGTCCAGCAAATCAATCGTGTTTTTGAAATTGTAGAGAAGACTTTAAAAGGTCATGAAGTGCGCCTTTTGACCTGTCAGAAATTGGCAACACTTGAGCTTCAAAAGGTAAGGAAGAACGAGTTTGTTGAGATTCTTCCTATTAATGTTGGTTGTTTAGGTGCTTGCACTTATTGCAAGACAAAGCATGTTCGGGGTCACCTAAGAAGTTACACAATTGATAGCCTTATTGGGTGTGTAAAATCTATGATATCCGAAGGGGTTAGAGCTTTGTTGTGGAAAGTTGTCTACTCTGAGCACTCAGATCCTAAGTCACTGTGGGTTGCTACCTTGGATCCAAATGGTGCAATCACTTTTTATGATCTCAACAAAAGGAGGGCTCCAAACCCTGAGGCGGTTAAGGTACCACAAGACCCTTGTGGCATTCCTCAGTCTAGTGATCTTTATTGTGGTTGCTTCTTTGAAAACTGTAGTGATGCTGGACATGGCAACAAAAAGGGAAGGAATGACACGGTGCTAGTAGTTGTCATATTTGTTCTCACAGTTCTGATTATAGTTGGTCTTATAACAGGATTCTGGTACTACTACAAGAGGAAGACGAATGTTGCTAAGTATCCTCAAGATAACTTGGACGAAGATGATAATTTCTTGGACAGACTTTCTGGGATGACTGCACATTTTACTTTTGCTGCTTTTTGTAGAGCAACTGAGGATTTTTCCAGAAACATTGCAGAAGGAGGGTTTGGCTCGGTGTATCTAGGTGTGCTTGAAGATGGCACTCAATTGGCTGTAAAAAAATTGGAAGGTGTTGGACAAGGTGCAAAAGAGTTTAAAGCGGAAGTGTCCATAGTTGGAAGTATTCATCATGTTCATTTGGTTAAGCTATCAGTTATTGTTCAAGTTGAAGAGATCTTCCCTCATATGACAGAGTTAACAAGTTTTTGTTCAAGTCACCTATGTAACAAGGATATACTCTAG 1203 0.4032 MKNRYLAHAQHHPPFHDSALPKRKLDKSCTVKSPSQYAMDAIISKGKSSNKPLVVVGCFPQGSRDLKDLERISIIGVQQINRVFEIVEKTLKGHEVRLLTCQKLATLELQKVRKNEFVEILPINVGCLGACTYCKTKHVRGHLRSYTIDSLIGCVKSMISEGVRALLWKVVYSEHSDPKSLWVATLDPNGAITFYDLNKRRAPNPEAVKVPQDPCGIPQSSDLYCGCFFENCSDAGHGNKKGRNDTVLVVVIFVLTVLIIVGLITGFWYYYKRKTNVAKYPQDNLDEDDNFLDRLSGMTAHFTFAAFCRATEDFSRNIAEGGFGSVYLGVLEDGTQLAVKKLEGVGQGAKEFKAEVSIVGSIHHVHLVKLSVIVQVEEIFPHMTELTSFCSSHLCNKDIL* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0158 400 Gene3D - 119 171 - -
Gso2g0158 400 ProSiteProfiles Protein kinase domain profile. 312 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso2g0158 400 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 234 371 - -
Gso2g0158 400 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 163 232 - -
Gso2g0158 400 ProSitePatterns Methylthiotransferase radical SAM domain signature. 121 141 IPR020612 GO:0051539
Gso2g0158 400 Gene3D Phosphorylase Kinase; domain 1 277 378 - -
Gso2g0158 400 ProSiteProfiles Methylthiotransferase N-terminal domain profile. 1 92 IPR013848 GO:0035596|GO:0051539
Gso2g0158 400 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE SD2-5 234 371 - -
Gso2g0158 400 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE SD2-5 163 232 - -
Gso2g0158 400 SUPERFAMILY Protein kinase-like (PK-like) 297 378 IPR011009 -
Gso2g0158 400 MobiDBLite consensus disorder prediction 1 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0158 Gso-Chr2 1587071 1588488 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0158 255 370 Receptor kinase-like Gene Family AT5G20050 36.441 8.96e-17 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Gso2g0158 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0158 K15865 - gmx:106797172 798.505