Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0143 ATGGGCAAGAAGAAGTTAACCTTTCTCATCCTCCTATTAGCCTCTCAAGCCTTGGCTGAAATCACTCCCAACACTTCTGTTTCTCCAGGAACAATATGCAAGTCCACCCCAGACCCATCTTATTGCAACTCCGTGCTCCCTCCCCAAAACGGCAACGTTTACGACTATGGCCGGTTCTCGGTCAGAAAGTCTCTTTCAAAAGCCACCAATTTCTTGAACTTAGTTAACAGATACCACCGTTCCTATCTTTCAACCTCCGCAATCCACGCCCTGGAAGATTGCCAAACCCTCGCCGAACTCAACATAGATTTTCTCTCCAGTTCCTTCGAAACGCTGAACAGAACAACGAGGCTTTTACCCACTTCACAAGCTGACGACATTCAAACCCTTTTAAGTGCCATTCTAACCAACCAACAAACCTGCTTGGAAGGCCTTCAAGCCACCGCCTCCGCATGGCGCGTCAGGAACGGACTCTCCGTTCCGCTCTCCAACGACACCAAGCTCTACAGCGTCTCTCTGGCACTCTTCACAAAGGGGTGGGTCCCCAGCGACGCTAATGTCTCCGTGTTTCAGCCAAACGCCAAGCAGCGTGGCTTTCGAAACGGGCGTTTGCCGCTCGAGATGTCCAGCAGAACGCGCGCGATCTACGAGTCGGTGAGTAAGAGAAAGCTCCTTCAGGCGGCGACGGTGGGCGACGTGGTTAAGGTAAAAGACATTGTGACGGTGAGTAAAGATGGAAGCGGAAACTTCACCACCATCGGCGACGCCCTCGCCGCGGCCCCGAACAAGACTGCATCCACGGCGGGGTACTTCCTGATCTACGTCACCGCCGGTGTTTACGAGGAAAATGTGTCTATTGATAAGAAAAAGACGTATTTGATGATGGTTGGAGATGGCATCAACAAGACAATTATTACTGGGAATCGCAGTGTTGTTGATGGCTGGACAACTTTTAAGTCAGCGACATTTGCGGTGGTTGGCGCAGGGTTCGTGGGTGTAAATATGACCATCCGCAACACTGCCGGAGCAGAGAAGCACCAGGCGGTAGCACTCCGAAACGGCGCAGATTTGTCCACGTTTTACAGCTGCAGCTTCGAAGGATACCAAGACACACTGTACACCCATTCCCTGCGACAATTCTACAGGGAATGCGACATCTACGGCACCGTAGATTTCATATTCGGAAACGCCGCGGCAGTGTTCCAAAACTGTAACATCTATCCTCGCCTTCCAATGAGTGGCCAATTCAACGCCATCACCGCACAGGGACGAACCGACCCAAATCAAAACACGGGCACTTCCATCCACAACTGCACGATCCGACCAGCCGATGATTTGGCTACGAACATCGATGCCGCTGAAACTTATCTCGGAAGGCCCTGGAAAAATTACTCCCGGACGGTTTTCATGCAGAGCTTTATGGACATTGTCATCAATTCTGCTGGGTGGCGCGAATGGGACGGTGATTTTGCTTTTAGCACTTTGTATTATGCGGAGTTTAACAACACTGGACCTGGTTCTAGCACTGTCAACAGAGTCACGTGGCCGGGTTACCACGTCATTAATGCCACTGATGCTGCTAATTTTACGGTCTCTAACTTCTTGCTTGGTGATAACTGGCTGCCCCAGACCGGAGTGGCTTACGCCAGTAACTTGATATAG 1662 0.5108 MGKKKLTFLILLLASQALAEITPNTSVSPGTICKSTPDPSYCNSVLPPQNGNVYDYGRFSVRKSLSKATNFLNLVNRYHRSYLSTSAIHALEDCQTLAELNIDFLSSSFETLNRTTRLLPTSQADDIQTLLSAILTNQQTCLEGLQATASAWRVRNGLSVPLSNDTKLYSVSLALFTKGWVPSDANVSVFQPNAKQRGFRNGRLPLEMSSRTRAIYESVSKRKLLQAATVGDVVKVKDIVTVSKDGSGNFTTIGDALAAAPNKTASTAGYFLIYVTAGVYEENVSIDKKKTYLMMVGDGINKTIITGNRSVVDGWTTFKSATFAVVGAGFVGVNMTIRNTAGAEKHQAVALRNGADLSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAAVFQNCNIYPRLPMSGQFNAITAQGRTDPNQNTGTSIHNCTIRPADDLATNIDAAETYLGRPWKNYSRTVFMQSFMDIVINSAGWREWDGDFAFSTLYYAEFNNTGPGSSTVNRVTWPGYHVINATDAANFTVSNFLLGDNWLPQTGVAYASNLI* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0143 553 CDD PMEI-like_3 31 180 - -
Gso2g0143 553 Pfam Pectinesterase 240 538 IPR000070 GO:0030599|GO:0042545
Gso2g0143 553 Pfam Plant invertase/pectin methylesterase inhibitor 31 175 IPR006501 GO:0004857
Gso2g0143 553 SUPERFAMILY Pectin lyase-like 237 549 IPR011050 -
Gso2g0143 553 TIGRFAM PME_inhib: pectinesterase inhibitor domain 7 176 IPR006501 GO:0004857
Gso2g0143 553 PANTHER PECTINESTERASE 17 551 - -
Gso2g0143 553 ProSitePatterns Pectinesterase signature 2. 386 395 IPR033131 -
Gso2g0143 553 Gene3D Invertase/pectin methylesterase inhibitor family protein 30 178 IPR035513 -
Gso2g0143 553 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 7-RELATED 17 551 - -
Gso2g0143 553 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 178 IPR035513 -
Gso2g0143 553 SMART PMEI_2 24 175 IPR006501 GO:0004857
Gso2g0143 553 Gene3D - 233 552 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0143 Gso-Chr2 1477190 1479788 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0143 1 553 Carbohydrate Esterase AT4G02330 63.811 0.0 735
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0143 K01051 - gmx:100780568 1103.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0143 2 1477190 1479788 Gso2g0143 2 1477190 1479788 ECH