Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0142 ATGAACAACCTCACACTTGCATCCATTCTGACCGTGATTTCTGCGCTACTACTCTTCTTGGGAACAACTCATTTCACTAACACCCCAATAACAATAACAAGAGCCCCAGATCAAAAACACCTCCACCATTTCCAAAAGCACATACAAGTAGTAGCCAAATCCACATGCCAAGGAACACTCTACCCAGACCTATGTGTCTCAACACTTGCCACATTCCCAGATCTCGCCACAAAATCTGTCCCACAAGTGATATCCTCAGTGGTGAACCACACCATGTACGAGGTAAGATCATCGTCCTACAATTGCAGCGGCCTCAAAAAGATGCTCAAAAACCTCAACCCACTCGACCAGAGAGCCCTCGACGACTGTCTCAAACTGTTCGAAGACACCAACGTTGAGCTCAAAGCCACCATCGACGATCTCTCCAAGAGCACCATAGGGTCGAAGCGGCACCATGACCTGCAGACTATGTTAAGCGGAGCAATGACCAACTTGTACACGTGCCTCGATGGATTTGCTTACAGCAAAGGACGCGTGAGGGACAGAATCGAGAAGAAGCTGCTTGAGATATCGCACCACGTGAGCAACTCGTTGGCCATGCTGAACAAAGTGCCTGGAGTGAAGAAATTAACAACTTCGGAATCTGTGGTTTTCCCCGAATATGGAAACATGAAAAAGGGTTTCCCCTCGTGGGTGTCCTCCAAAGACCGAAAGCTTCTTCAAGCTAAAGTGAAAGAGACCAAGTTCGATCTTCTTGTAGCGAAAGATGGCACTGGCAACTTCACCACTATAGGGGAAGCACTCGCTGTGGCTCCCAACTCCAGCACAACCAGGTTTGTGATACACATAAAAGAGGGGGCATACTTCGAGAATGTGGAAGTGATAAGGAAGAAGACGAATCTGATGTTTGTTGGAGACGGGATTGGAAAGACAGTAGTGAAAGGCAGTAGGAATGTTGTGGATGGGTGGACCACTTTTCAATCTGCTACTGTTGCTGTAGTAGGAGCAGGATTCATAGCAAAGGGTATAACATTTGAGAACTCAGCAGGGCCTGACAAACACCAAGCTGTGGCACTTAGAAGTGGTGCTGACTTCTCAGCTTTCTACCAATGCAGTTTCGTTGGCTACCAAGACACTCTCTACGTGCATTCCCTACGCCAATTCTACCGTGAATGCGACATTTACGGTACTGTAGACTTCATTTTCGGCAATGCAGCTGTGGTATTCCAAAACTGCAACTTATACGCACGCAAGCCAAACGAAAACCAGAAGAACTTGTTCACCGCACAAGGCAGAGAGGACCCTAACCAAAACACTGGCATATCCATCTTGAACTGCAAGATTGCAGCTGCAGCAGATTTGATCCCTGTGAAATCCTCCTTCAAGAGCTACCTAGGACGTCCTTGGAAAATGTACTCTAGGACTGTTGTCCTAAAATCTTTCGTGGAGGATCTGATTGACCCAGCAGGGTGGTTGGAATGGAATGAAACATTTGCATTGGATACGTTGTATTATGGGGAGTACATGAATAGAGGTCCAGGTGCAAACACAAATGGTAGGGTAACGTGGCCAGGTTATAGGGTAATTAACAGCTCCACTGAGGCAACCCAATTCACAGTTGGGCAGTTTATTCAAGGCAATGATTGGTTGAACAGTACTGGCATTCCATTCTTCTCTGGTTTGGTTTGA 1689 0.4677 MNNLTLASILTVISALLLFLGTTHFTNTPITITRAPDQKHLHHFQKHIQVVAKSTCQGTLYPDLCVSTLATFPDLATKSVPQVISSVVNHTMYEVRSSSYNCSGLKKMLKNLNPLDQRALDDCLKLFEDTNVELKATIDDLSKSTIGSKRHHDLQTMLSGAMTNLYTCLDGFAYSKGRVRDRIEKKLLEISHHVSNSLAMLNKVPGVKKLTTSESVVFPEYGNMKKGFPSWVSSKDRKLLQAKVKETKFDLLVAKDGTGNFTTIGEALAVAPNSSTTRFVIHIKEGAYFENVEVIRKKTNLMFVGDGIGKTVVKGSRNVVDGWTTFQSATVAVVGAGFIAKGITFENSAGPDKHQAVALRSGADFSAFYQCSFVGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNLYARKPNENQKNLFTAQGREDPNQNTGISILNCKIAAAADLIPVKSSFKSYLGRPWKMYSRTVVLKSFVEDLIDPAGWLEWNETFALDTLYYGEYMNRGPGANTNGRVTWPGYRVINSSTEATQFTVGQFIQGNDWLNSTGIPFFSGLV* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0142 562 Pfam Plant invertase/pectin methylesterase inhibitor 53 200 IPR006501 GO:0004857
Gso2g0142 562 CDD PMEI-like_3 54 206 - -
Gso2g0142 562 PANTHER PECTINESTERASE 20 558 - -
Gso2g0142 562 Pfam Pectinesterase 250 547 IPR000070 GO:0030599|GO:0042545
Gso2g0142 562 TIGRFAM PME_inhib: pectinesterase inhibitor domain 49 203 IPR006501 GO:0004857
Gso2g0142 562 SMART PMEI_2 47 200 IPR006501 GO:0004857
Gso2g0142 562 SUPERFAMILY Pectin lyase-like 248 560 IPR011050 -
Gso2g0142 562 ProSitePatterns Pectinesterase signature 2. 394 403 IPR033131 -
Gso2g0142 562 Gene3D Invertase/pectin methylesterase inhibitor family protein 51 206 IPR035513 -
Gso2g0142 562 Coils Coil 124 144 - -
Gso2g0142 562 PANTHER PECTINESTERASE 20 558 - -
Gso2g0142 562 Gene3D - 244 561 IPR012334 -
Gso2g0142 562 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 205 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0142 Gso-Chr2 1467870 1473044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0142 76 557 Carbohydrate Esterase AT4G02320 55.758 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0142 K01051 - gmx:100802881 1130.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0142 2 1467870 1473044 Gso2g0142 2 1467870 1473044 ECH
Gso19g1786 19 46617166 46619330 Gso2g0142 2 1467870 1473044 PCT
Gso3g1821 3 43864646 43866822 Gso2g0142 2 1467870 1473044 PCT
Gso2g0142 2 1467870 1473044 Gso19g1787 19 46629261 46634569 PCT