Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0139 ATGTGTGGCGGTGCCATCATCGCTGACTTCATACCCCGCCGTGGAGGCCGCCGCCTCACGGCCTCCGAGCTCTGGCCAAACTCCTTCGCCAAAGACGATGACTTTGACTTGGATTACTCCCACATCGCTACCCAACAACCCTCCACTCTCAAAAGGTCCCAACCTCCCAAAGTTAGCGAGCAGGTTGAGAATAAGCCGGTGAAGAGGCAGAGGAAGAATCTCTACAGAGGGATTCGGCAGCGTCCGTGGGGCAAATGGGCCGCGGAGATTCGCGATCCTAGAAAAGGGGTTCGTGTCTGGTTGGGCACCTTTAACACCGCAGAAGAAGCCGCGAGAGCCTACGATCGTGAAGCTCGAAAAATCCGAGGCAAAAAGGCTAAGGTGAATTTCCCCAACGAGGACGACGAATATTCCATTCAAGCTCGTAATCCAATTCCACCCCTTCCTTTCGCTCCACAACACCCTCCCCTGTACCAGCAACAGTACCGTTGCGATCTCAACAATGCCCCTAAAAATCTCAACTTTGAGTTCGGTTACGACCTGAACCACGCGGAGGCGTTCCCATCCCGCGTGGACGCCGTCAACGCTGACTCGGTGGTTGTCTCCGTTGATGAAAATTCGGGGTCAGCGTCGGGTTCAGAGGGTGCTTATTCGACAACGGAGTTCATGGGGTCCGTTCAGAACGGGAACGGTTATTTGGGTGGCACGGTAATGGAGAAGAAGGAGAAAGAGACAGAGGTTATTGAAGCTGAAGAAGAAAAGAACAAAGTGCTGGAGCTTTCTGAGGAGCTGATGGCGTACGAAAATTACATGAAGTTTTATCAGATTCCGTACTATGATGGACAATCCACGACGAATAATGTTCAGGAAAGCTTGGTTGGGGATCTCTGGAGTTTCGATTAG 903 0.5216 MCGGAIIADFIPRRGGRRLTASELWPNSFAKDDDFDLDYSHIATQQPSTLKRSQPPKVSEQVENKPVKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDREARKIRGKKAKVNFPNEDDEYSIQARNPIPPLPFAPQHPPLYQQQYRCDLNNAPKNLNFEFGYDLNHAEAFPSRVDAVNADSVVVSVDENSGSASGSEGAYSTTEFMGSVQNGNGYLGGTVMEKKEKETEVIEAEEEKNKVLELSEELMAYENYMKFYQIPYYDGQSTTNNVQESLVGDLWSFD* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0139 300 Coils Coil 240 270 - -
Gso2g0139 300 MobiDBLite consensus disorder prediction 45 68 - -
Gso2g0139 300 PANTHER EREBP TRANSCRIPTION FACTOR 1 279 - -
Gso2g0139 300 SUPERFAMILY DNA-binding domain 74 132 IPR016177 GO:0003677
Gso2g0139 300 Pfam AP2 domain 75 123 IPR001471 GO:0003700|GO:0006355
Gso2g0139 300 Gene3D AP2/ERF domain 74 132 IPR036955 GO:0003700|GO:0006355
Gso2g0139 300 ProSiteProfiles AP2/ERF domain profile. 74 131 IPR001471 GO:0003700|GO:0006355
Gso2g0139 300 SMART rav1_2 74 137 IPR001471 GO:0003700|GO:0006355
Gso2g0139 300 MobiDBLite consensus disorder prediction 45 60 - -
Gso2g0139 300 PANTHER DNA-BINDING DOMAIN 1 279 IPR044808 GO:0003700|GO:0009873
Gso2g0139 300 CDD AP2 75 132 IPR001471 GO:0003700|GO:0006355
Gso2g0139 300 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Gso2g0139 300 PRINTS Ethylene responsive element binding protein signature 97 113 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0139 Gso-Chr2 1433385 1434871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0139 1 132 AP2-EREBP Transcription Factor Family AT3G16770 57.353 5.23e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso2g0139 AP2 8.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0139 K09286 - gmx:100819416 566.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0139 2 1433385 1434871 Gso2g0139 2 1433385 1434871 ECH
Gso2g0139 2 1433385 1434871 Gso10g0144 10 1513289 1514888 GST