Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0130 ATGTCAAAAGCAAACGCAAAGAACAAATCCCCCTCCACCGAGCTCCACCCTCCTTACTTCGAGATGATTGCGGATGCGATATCGTCCTTGAAAGACCGCACGGGTTCGAGCCAGCCAGCGATAGCCAAGTTCATCGAGGACAAGCACAGCAAAGTGCTCCCTCCCAACTTCCGGAAACTTCTCTCCGTTCAGTTGAAGAAACTCGTCAAATCGGAGAAGCTTTACAAGGTCAAAAACTCTTACAAACTTTCTTCCGCCACGGACAAAGAGACCCAGAAGAATACCGAAACCGAGCCCAAACAGAAGGTTGAAAAGAAGAAGAAGAAGAAGAAGAAGGTGGGTGAGAAGATTAAGAGGCTGAGCCAAGTGAAGACACCCGAAACTCTGAAGAAGAAAGCACCCACCAAGAAGGACGCGGCGGCAACTAAGAAGAAATCTGCGTCGGCGGTGGAAGGTTCAGGAGGAGGGAAAGTGAAGTGTTTGAGTCAGGTGAAGACCCCTGAGGCCTTGAAGAAGAAGAAGCCCAATTTGACACCCAAACCTTCCAGGCCCAACAGGAATGCTAGGAAATGA 573 0.4956 MSKANAKNKSPSTELHPPYFEMIADAISSLKDRTGSSQPAIAKFIEDKHSKVLPPNFRKLLSVQLKKLVKSEKLYKVKNSYKLSSATDKETQKNTETEPKQKVEKKKKKKKKVGEKIKRLSQVKTPETLKKKAPTKKDAAATKKKSASAVEGSGGGKVKCLSQVKTPEALKKKKPNLTPKPSRPNRNARK* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0130 190 MobiDBLite consensus disorder prediction 89 103 - -
Gso2g0130 190 PANTHER HISTONE H1 4 181 - -
Gso2g0130 190 Pfam linker histone H1 and H5 family 16 83 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso2g0130 190 MobiDBLite consensus disorder prediction 176 190 - -
Gso2g0130 190 Coils Coil 103 123 - -
Gso2g0130 190 MobiDBLite consensus disorder prediction 80 190 - -
Gso2g0130 190 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 15 85 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso2g0130 190 PRINTS Histone H5 signature 2 23 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gso2g0130 190 PRINTS Histone H5 signature 29 46 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gso2g0130 190 PRINTS Histone H5 signature 99 113 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gso2g0130 190 PRINTS Histone H5 signature 131 148 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gso2g0130 190 CDD H15 16 86 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso2g0130 190 PANTHER HISTONE H1 4 181 - -
Gso2g0130 190 MobiDBLite consensus disorder prediction 118 144 - -
Gso2g0130 190 SMART h15plus2 13 80 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso2g0130 190 SUPERFAMILY "Winged helix" DNA-binding domain 15 93 IPR036390 -
Gso2g0130 190 Gene3D - 12 114 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0130 Gso-Chr2 1324367 1325375 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0130 17 83 Single Myb Histone (SMH) Gene Family AT1G72740 43.284 2.12e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0130 K11275 - gmx:100306187 301.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0130 2 1324367 1325375 Gso2g0130 2 1324367 1325375 ECH