Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0121 ATGGGAAGGGCTCCTTGTTGTGAGAAAGTGGGATTGAAGAAGGGGAGGTGGACAGCAGAGGAGGATGAGATCTTGGCAAAATACATTCAGGCCAATGGGGAAGGTTCTTGGAGGTCATTGCCTAAAAATGCAGGATTATTAAGGTGTGGGAAGAGTTGCAGGCTGAGATGGATTAACTATTTGAGAGCTGACCTTAAAAGAGGAAACATTTCTGCTGAAGAGGAAAATACCATTGTTAAGTTGCACGCTTCTTTTGGTAACAGGTGGTCTTTGATAGCAAATCACTTACCAGGAAGAACAGACAACGAGATAAAAAACTACTGGAATTCTCACCTCAGCAGGAAAATTTACAGTTTCCCAGGTGCAGGTGCAGGTGCAAGTGCAGGGATCATGGATACACCTAAGGTAGTATATATTCCTCCCAAGCGCAAATGTGGTAGAACAAGTCGTTGGGCCATGAAGAAAAACAAAACATACACCCAAAAAGTCAATGATAGGATTAACCAGAGACACACACAAATTGGTTTCCCTCAACAGAACAGTGACACCGCAGTTCCGACGCCACCAACTCCGTCTCTAGAGAGTGAGGGTTTGTCAAACGCCGTTAATGACTTCAAGGTCCTGGACGGTGACGTGGCAGAGTTTGATGAGCCGAGAACGGAGGAGCTGGAGGCGGAGGTAAATAAACGTGACAATAGCGTTGGAGGCGTGGAAGAAAGTAGTAATACCGATGAAGACATCTTGGGACTGTGTGAACTAGAGGGCATTAATGAGGACAGTGGGATGTTGTTGGGTTTTAGTGACATTTTGGAAAGTTGCCTTGCGGAAACAACATGTGGGGTTTGGGACATAAGTGAAGAGAGAGAAAGCAATGACGTGGTGGCGGCTGATGCTTGTCGCGACAAAATAGCATCGAGTGAGGAAGGGTCATGCTCTTCCATGAATCAAGACTGGGACTGGGAGAGCGTGTTAGAGTTTAGTAACGCTGTTGATAATTGGGAGGACCAAGACAAATTGCTCACTTGGCTGTGGGAGGACGATGACTGCAAGAGATTGGGAGAGACAGATACTCAGATACTACAAAACGACATGGTTATTGATTGGTTTCTCTCTTGA 1116 0.4579 MGRAPCCEKVGLKKGRWTAEEDEILAKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNISAEEENTIVKLHASFGNRWSLIANHLPGRTDNEIKNYWNSHLSRKIYSFPGAGAGASAGIMDTPKVVYIPPKRKCGRTSRWAMKKNKTYTQKVNDRINQRHTQIGFPQQNSDTAVPTPPTPSLESEGLSNAVNDFKVLDGDVAEFDEPRTEELEAEVNKRDNSVGGVEESSNTDEDILGLCELEGINEDSGMLLGFSDILESCLAETTCGVWDISEERESNDVVAADACRDKIASSEEGSCSSMNQDWDWESVLEFSNAVDNWEDQDKLLTWLWEDDDCKRLGETDTQILQNDMVIDWFLS* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0121 371 Gene3D - 11 67 - -
Gso2g0121 371 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso2g0121 371 Gene3D - 71 116 - -
Gso2g0121 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso2g0121 371 CDD SANT 16 61 IPR001005 -
Gso2g0121 371 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso2g0121 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gso2g0121 371 MobiDBLite consensus disorder prediction 174 197 - -
Gso2g0121 371 CDD SANT 71 112 IPR001005 -
Gso2g0121 371 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 329 - -
Gso2g0121 371 PANTHER MYB TRANSCRIPTION FACTOR 2 329 - -
Gso2g0121 371 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gso2g0121 371 SMART sant 66 114 IPR001005 -
Gso2g0121 371 SMART sant 13 63 IPR001005 -
Gso2g0121 371 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gso2g0121 371 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0121 Gso-Chr2 1258719 1263142 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0121 1 154 MYB Transcription Factor Family AT2G47460 72.956 3.94e-77 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso2g0121 Myb_DNA-binding 3.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0121 K09422 - gmx:100814275 759.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0121 2 1258719 1263142 Gso2g0121 2 1258719 1263142 ECH
Gso2g0121 2 1258719 1263142 Gso10g0130 10 1349130 1354016 GST
Gso19g1808 19 46799340 46803716 Gso2g0121 2 1258719 1263142 PCT
Gso3g1843 3 44042349 44046468 Gso2g0121 2 1258719 1263142 PCT
Gso2g0121 2 1258719 1263142 Gso19g1808 19 46799340 46803716 PCT
Gso2g0121 2 1258719 1263142 Gso3g1843 3 44042349 44046468 PCT