Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0120 ATGGCTAGTCCAAGAGCCAACCTCTTGTTCCTCCTATGGCTTCTGTGTTATTCTCTCTACGCCATTGCCGGAAAGAGCTATTACGACGTACTTGAAATCCCGAAAGGCGCGTCGGAGGAGCAGATAAAGAGAGCGTACAGGAAGCTGGCGTTAAAGTACCATCCCGATAAGAACCCTGGCAACCAAGAAGCCAATAAGAGATTTGCCGAAATTAACAATGCGTATGAAGTACTCTCGGACAGCGAGAGGAGAAGCATTTACGATAGGTACGGCGAAGAGGGCTTGAAACAGCATGCTGCCGGAGGCGGCAGAGGTGGTGGCGGAATGGGAATGGAATTCCAAGACATTTTCGCCTCCTTCTTCGGGGGAGGTCCAATGGAGGAGGAAGAGAGAATTGTGAAAGGTGATGATGTGCTTGTTGAATTGGATGCAACGCTCGAGGATTTGTACATGGGAGGTTCCTTAAAGGTTTGGAGGGAGAAAAATGTTTTAAAGCCAGCATCTGGGAAGAGACTCTGTAACTGTAGAAATGAGCTTTATCACAAGCAAATAGGTCCTGGGATGTTTCAACAGTTCACGGAGCAGGTCTGTGACAAATGTCCAAATGTTAAATATGAAAGAGATGGTCATTTCATCACTGTTGATATTGAGAAAGGCATGCAAGATGGGCAGGAAGTGCTATTTTTTGAGGATGGTGAGCCCATAATTGATGGAGAGTCTGGAGATCTAAGGATTCGTATCCGAACAGCACCCCATGACCTCTTCAGAAGGGAAGGCAATGACTTGCACACCACTGTCACTATAACACTGGTTCAAGCACTTGTTGGCTTTGAGAAGACTGTTAAACACCTAGATGAGCATCTGGTGGACATAAGCACGAAGGGAATCACAAATCCAAAGCAAGTGAGGAAGTTCAAAGGAGAGGGCATGCCACTGCATATGAGCACAAAGAAAGGAGATCTTTACGTCACGTTTGAGGTTCTGTTCCCAAACTCACTAACAGAGGAGCAGAAAACAAATATAATAGCAATTATTGATTAG 1041 0.4563 MASPRANLLFLLWLLCYSLYAIAGKSYYDVLEIPKGASEEQIKRAYRKLALKYHPDKNPGNQEANKRFAEINNAYEVLSDSERRSIYDRYGEEGLKQHAAGGGRGGGGMGMEFQDIFASFFGGGPMEEEERIVKGDDVLVELDATLEDLYMGGSLKVWREKNVLKPASGKRLCNCRNELYHKQIGPGMFQQFTEQVCDKCPNVKYERDGHFITVDIEKGMQDGQEVLFFEDGEPIIDGESGDLRIRIRTAPHDLFRREGNDLHTTVTITLVQALVGFEKTVKHLDEHLVDISTKGITNPKQVRKFKGEGMPLHMSTKKGDLYVTFEVLFPNSLTEEQKTNIIAIID* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0120 346 ProSitePatterns Nt-dnaJ domain signature. 68 87 IPR018253 -
Gso2g0120 346 PRINTS DnaJ domain signature 28 46 IPR001623 -
Gso2g0120 346 PRINTS DnaJ domain signature 46 61 IPR001623 -
Gso2g0120 346 PRINTS DnaJ domain signature 63 83 IPR001623 -
Gso2g0120 346 PRINTS DnaJ domain signature 83 102 IPR001623 -
Gso2g0120 346 Gene3D - 130 251 - -
Gso2g0120 346 CDD DnaJ_C 136 333 - -
Gso2g0120 346 CDD DnaJ 27 80 IPR001623 -
Gso2g0120 346 Gene3D - 252 330 - -
Gso2g0120 346 SUPERFAMILY HSP40/DnaJ peptide-binding domain 133 256 IPR008971 GO:0006457|GO:0051082
Gso2g0120 346 Pfam DnaJ domain 27 88 IPR001623 -
Gso2g0120 346 PANTHER BNAA09G39960D PROTEIN 8 343 - -
Gso2g0120 346 Pfam DnaJ C terminal domain 140 330 IPR002939 -
Gso2g0120 346 SUPERFAMILY HSP40/DnaJ peptide-binding domain 255 339 IPR008971 GO:0006457|GO:0051082
Gso2g0120 346 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 8 343 IPR044713 GO:0006457|GO:0030544
Gso2g0120 346 ProSiteProfiles dnaJ domain profile. 26 91 IPR001623 -
Gso2g0120 346 SUPERFAMILY Chaperone J-domain 23 123 IPR036869 -
Gso2g0120 346 Gene3D DnaJ domain 23 129 IPR036869 -
Gso2g0120 346 SMART dnaj_3 25 83 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0120 Gso-Chr2 1244876 1249492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0120 25 90 C2H2 Transcription Factor Family AT1G74250 42.254 4.66e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0120 K09517 - gmx:100799151 682.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0120 2 1244876 1249492 Gso2g0120 2 1244876 1249492 ECH