Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0118 ATGATTGAAGCGACTTACTCATCGCGAATGTTTCGCGGTGTTCGTTTCGTTCTCCGTGGCTTCAATCCCGTCGCCGAAAATCAGATCCGGTTCAAGCTTGTGAATGGCGGCGGAGTCGACGTAGGACAGTACGGTGGGAGTTGCACGCACGTCATTGTTGATAACATTGCTTATGACGATCCTGTGTGTGTTGCTGCTAGAAATGATCGGAAGACGGTTGTGACCGCATTGTGGGTTGAACACAGTGCTGATATTGGAATGCCTGTTGATGCTACTTCGGTTATGTACAGACCTCTTAAAGACTTAGATGGAATACCAGGTGCAAAGGATTTGATAATGTGCTTGACTGGTTATCTACGTCAGGATCGGGATGACATTATGACAATGGTTGGCCTAATGGGTGCACAGTTTTCTAAGCCTTTGGTGGCAAACAAGGTTACTCATCTCATATGCTACAAATTTGAAGGAGAGAAGTATGAGCTTGCCAACAAATTGGGCACAATAAAGCTAGTTAATCATCGTTGGTTGGAAGATTGCTTGAAGGAATGGGTGCTTCTTCCCGAAGACAAATATAACAAGAGTGGTTTTGAACTAGAGACGATGGTGGAAGAGGCTAAGGATTCTGAGGAAGAGGCTGAAGATTCTAAGCTGGGACAATCAGGGGGAAGAAATAGAAAACAAAGCCCCCTTGGTTCTAAAATTGGTATAGCTGCTACTCCTGGATTGTCGAAATCAGTAAGAGAGGCATCTAAGGCCTTACCAGATTCTACTGGTCTACAGGTCTTGCCAAATGTCAATAACGGTGAAAACTCTTTAACCATTCCAGGAAATAAGAGCAGACCTGATCAAGACTCGAGCTTTCATAATGTTGATGACTCTAAGATAAGCTATTGGGCTTCTGATGTTTCTAGACATTCTATATCATGTCAGTTACCTGACAAATATGTAAAGATCAGTGAGTCTAAGAATGCTGATTCTCCAAAGGCACCTGGCTGCCAGGATCTTGGCAATATGGGAAATACAAATTCGTCTGGTCAGAAGCCTGCTCTGCATGGCGACATCTCAGAGTCTAAGAAATTGACAAGTGACTTGAGAGCACCTTCTGCAAGTGCTGTTGGAGTTGCACATTCAAATGAAAAGCTTAGAACTGTGAGTTATTCTACGAAGAACCAAAACGGATTTACTCTCCCAAGGATCTTAGATGAAAGCTCAGGCAGAGAAGGCAACAACTGTGATAACAATAAGGTTAAAAGGGCTAGTAAGGGTGTCAAATCTATCAGTGTTGAAGTTTCTGGGAAAGGAAATGATTTTATTAAAGAAGATGAGCCAATTAGTTTATTGCCTCAAAAGAGGATAAATGAAGCTTCTTTTACTAAATTAAAATCGAGAAAGAAGACTTGTGTCCCGTCAGCAAATGGTAAATCTCAAGGATTAAAAGTGACATCTCAGGTTGATGAGCCACCTGAAGTCGATGACTATTTTTCTATAGGCAAAGATGGTATAAATAACTCAAACACTTGCTTAGTTTTGAAACCTTCAGGCTCTACCTCCAACTCACTGGCATTTGATGAGCTTTTTTCAAGAAATGCAAACCCAGAATCTGTTCAGTGTGATAATGTCTGTCAGAATTCACCAAAAACGGCTGTTCAGAGCTTAAGTGAATCTAAAATTAATGGCAAGCCTGATATCACAGATTCTGGAATGCAACAAGTTGATGGGGATGAAGCAGAGCAACATAATGTCACTAGAAATCTAGATTGTTCTTCTCTGGGAAACAAAAAGTCATGTAATGTGGAATCTGCTGGTTGTACTAAATTGGATTTAATCACTGAAGAAAGTAATAAACTGGTTAGAAACTCACCCCGAAAGAAGTCGGTTGCCAAGAGAAGTTTGGGTTCTAAACCTAAATTAGGTGCCACTGCTAAACAGAAAAAATCACTTTCCCTGACTAAAACTTCCCTGCAAGGTGAAGGTGTAACTTGTTCCAGTGGAAGCAAAGAGATTGCAACTTGTGATGCGAAGATGCATCAGGGATGTCCCAAAATCTTTGATGTTAATAAAACAACAGAGCAAGAAATTGTTGGTAAAAATGCAGAAGATGCTGGTGACAGAACTGAGTTTTTGGACGATGAAACCGAGGCTCCAGATGACAAATGTGAATATGAGTTAGGAATGGCCCTTGATGAAGACTTGGTTCATCTTTCAAAAAAGCCATATACAGCAAAAGAAGAGAAGTCAGAAGCAATCTGCCCTGCAACAAAATGTGAAGAGGCAATGCCTCCTAAGAAAGGCACAAATAAAACTGAAAAACAGAAAACATCTTCACTGCCAGTAAAGCATCAAGCAAGAAAAGGTTCTGCGGGTAAAGTCAAGGCCACAGTTAGTAAATATGCTGAAGATGATGGTGACAGAACTGAGCTTGTGAACGATGAAATTGAGGCCCCAGATGACAAATGTGAATACGAGTTACGAATGGCACTCAATGAAGAATCTCATCTTTCCAAAAAGTCAGATACAGCAACAGAAGAGAAGTCGGAAGTAATTTGCCCTGCAACAAAATGTGAAGAGACAATGCCTCCTAAGAAAGGCACAAAAAAAACTGAAAAACAGAAGCCATCTTCACTGGTAGTAAAGAATCAAGCAAGAAAATGTCCTGCTGGTAATGCCAAGGCAACAGTTGCCAAGGAATTATCGAAATCTAATATGGCAGTATCAGGGGAGAAGATTCCTAATGAGACTGGGCATGAGCCAGAGATAGAAACCATGGAAGAAATGTCCCTTCCTGATGATAAAAGTGACGAGTCAGCTGTTCAAAGAAATAAGTCAGAGAATTTTTCTGAAGAGAAGGAGAATAAGCCAATTGATGGAGAGCAGGGCAGAAGCAATGGTAATCCAACTATTAAATCTAGTGTAAGGCCAGCAAAGATCAAGTCTAAGAAATCGGGGCTCAATCCATCTATAACAGAATCTAACACGAGAGTAAAAACTGAAGCCGCATGTTTTATATTAAGTGGGCATCGTCTACAGAGAAAAGAGTTTCAACAAGTAATCAAGCGTTTAAAAGGAAGGGTTTGCCGGGATTCTCACCAGTGGTCATATCAGGCAACACACTTCATAGCTCCAGACCCCATACGCAGGACAGAGAAATTTTTTGCTGCTGCTGCATCAGGAAGGTGGATTCTTAAAACTGATTTCCTAACTGCCAGTAGCCAGGCAGGAAAATTGTTGGCAGAGGAGCCTTATGAGTGGCACCAGAATGGTCTCAGTGAGGATGGCACAATCAATATGGAGGCTCCGAGAAAGTGGCGGTTGTTGAAAGAAAGAACAGGTCATGGAGCCTTCTATGGAATGCGTATTGTTGTGTACGGCGATTGCATTGCTCCACCTTTGGATACTCTGAAACGTGTCATCAAAGCTGGAGATGGAACAATATTAGCAACTTCTCCTCCTTATACCCGCTTCCTTGGTACCGGAATCGACTATGCTGTAGTTAGCCCTGGCATGCCACGTGTTGACACGTGGGTCCAAGAGTTCTTAAAACATGAGATACCTTGTGTTGTAGCGGACTACTTGGTTGAGTATGTTTGCAAGCCCGGGTTCTCCCTTGAGAGACATGTATTATATGGCAGTCATGCTTGGGCAGAGAAATCATTTGATAAACTTAAAAGCAAGGCAGAAGAGATTGTTGAAGAACTCGTTGCTCCTGAAGATTCCCGTGATGATGATATAATTTGCAAAGTATGTGGATCCCGGGATAGAGGAGATGTAATGCTGATTTGTGGTGATGAAAGTGGTTCCGTCGGGTGTGGAATCGGTACCCATATCGATTGCTGCGATCCTCCACTAACAGCTGTCCCTGAGGAGGATTGGTTTTGCCCAAAGTGCAGTAGCACCCGAAACTGCTCAAACAAACCCAGTAAAAGGAAAAAGACTGTCTTATCTTCATCCAAGTGTACGTAA 3960 0.4207 MIEATYSSRMFRGVRFVLRGFNPVAENQIRFKLVNGGGVDVGQYGGSCTHVIVDNIAYDDPVCVAARNDRKTVVTALWVEHSADIGMPVDATSVMYRPLKDLDGIPGAKDLIMCLTGYLRQDRDDIMTMVGLMGAQFSKPLVANKVTHLICYKFEGEKYELANKLGTIKLVNHRWLEDCLKEWVLLPEDKYNKSGFELETMVEEAKDSEEEAEDSKLGQSGGRNRKQSPLGSKIGIAATPGLSKSVREASKALPDSTGLQVLPNVNNGENSLTIPGNKSRPDQDSSFHNVDDSKISYWASDVSRHSISCQLPDKYVKISESKNADSPKAPGCQDLGNMGNTNSSGQKPALHGDISESKKLTSDLRAPSASAVGVAHSNEKLRTVSYSTKNQNGFTLPRILDESSGREGNNCDNNKVKRASKGVKSISVEVSGKGNDFIKEDEPISLLPQKRINEASFTKLKSRKKTCVPSANGKSQGLKVTSQVDEPPEVDDYFSIGKDGINNSNTCLVLKPSGSTSNSLAFDELFSRNANPESVQCDNVCQNSPKTAVQSLSESKINGKPDITDSGMQQVDGDEAEQHNVTRNLDCSSLGNKKSCNVESAGCTKLDLITEESNKLVRNSPRKKSVAKRSLGSKPKLGATAKQKKSLSLTKTSLQGEGVTCSSGSKEIATCDAKMHQGCPKIFDVNKTTEQEIVGKNAEDAGDRTEFLDDETEAPDDKCEYELGMALDEDLVHLSKKPYTAKEEKSEAICPATKCEEAMPPKKGTNKTEKQKTSSLPVKHQARKGSAGKVKATVSKYAEDDGDRTELVNDEIEAPDDKCEYELRMALNEESHLSKKSDTATEEKSEVICPATKCEETMPPKKGTKKTEKQKPSSLVVKNQARKCPAGNAKATVAKELSKSNMAVSGEKIPNETGHEPEIETMEEMSLPDDKSDESAVQRNKSENFSEEKENKPIDGEQGRSNGNPTIKSSVRPAKIKSKKSGLNPSITESNTRVKTEAACFILSGHRLQRKEFQQVIKRLKGRVCRDSHQWSYQATHFIAPDPIRRTEKFFAAAASGRWILKTDFLTASSQAGKLLAEEPYEWHQNGLSEDGTINMEAPRKWRLLKERTGHGAFYGMRIVVYGDCIAPPLDTLKRVIKAGDGTILATSPPYTRFLGTGIDYAVVSPGMPRVDTWVQEFLKHEIPCVVADYLVEYVCKPGFSLERHVLYGSHAWAEKSFDKLKSKAEEIVEELVAPEDSRDDDIICKVCGSRDRGDVMLICGDESGSVGCGIGTHIDCCDPPLTAVPEEDWFCPKCSSTRNCSNKPSKRKKTVLSSSKCT* 1320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0118 1319 CDD BRCT_TopBP1_rpt7 1000 1073 - -
Gso2g0118 1319 MobiDBLite consensus disorder prediction 257 283 - -
Gso2g0118 1319 MobiDBLite consensus disorder prediction 760 776 - -
Gso2g0118 1319 MobiDBLite consensus disorder prediction 335 350 - -
Gso2g0118 1319 MobiDBLite consensus disorder prediction 321 352 - -
Gso2g0118 1319 SUPERFAMILY BRCT domain 8 92 IPR036420 -
Gso2g0118 1319 MobiDBLite consensus disorder prediction 752 813 - -
Gso2g0118 1319 ProSiteProfiles BRCT domain profile. 109 193 IPR001357 -
Gso2g0118 1319 SUPERFAMILY FYVE/PHD zinc finger 1234 1302 IPR011011 -
Gso2g0118 1319 MobiDBLite consensus disorder prediction 396 416 - -
Gso2g0118 1319 ProSiteProfiles Zinc finger PHD-type profile. 1242 1298 IPR019787 -
Gso2g0118 1319 SMART PHD_3 1244 1296 IPR001965 -
Gso2g0118 1319 MobiDBLite consensus disorder prediction 851 988 - -
Gso2g0118 1319 SMART BRCT_7 992 1073 IPR001357 -
Gso2g0118 1319 SMART BRCT_7 106 183 IPR001357 -
Gso2g0118 1319 SMART BRCT_7 1111 1198 IPR001357 -
Gso2g0118 1319 SMART BRCT_7 8 86 IPR001357 -
Gso2g0118 1319 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 2 1295 IPR044254 -
Gso2g0118 1319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1208 1311 IPR013083 -
Gso2g0118 1319 Gene3D BRCT domain 99 224 IPR036420 -
Gso2g0118 1319 SUPERFAMILY BRCT domain 1001 1086 IPR036420 -
Gso2g0118 1319 Pfam BRCA1 C Terminus (BRCT) domain 1004 1068 IPR001357 -
Gso2g0118 1319 MobiDBLite consensus disorder prediction 911 956 - -
Gso2g0118 1319 Gene3D BRCT domain 2 95 IPR036420 -
Gso2g0118 1319 SUPERFAMILY BRCT domain 109 192 IPR036420 -
Gso2g0118 1319 Pfam twin BRCT domain 111 175 IPR001357 -
Gso2g0118 1319 Pfam PHD-finger 1244 1297 IPR019787 -
Gso2g0118 1319 Gene3D BRCT domain 993 1109 IPR036420 -
Gso2g0118 1319 MobiDBLite consensus disorder prediction 858 872 - -
Gso2g0118 1319 MobiDBLite consensus disorder prediction 616 648 - -
Gso2g0118 1319 ProSiteProfiles BRCT domain profile. 6 96 IPR001357 -
Gso2g0118 1319 MobiDBLite consensus disorder prediction 957 971 - -
Gso2g0118 1319 MobiDBLite consensus disorder prediction 202 288 - -
Gso2g0118 1319 ProSiteProfiles BRCT domain profile. 1001 1083 IPR001357 -
Gso2g0118 1319 MobiDBLite consensus disorder prediction 794 813 - -
Gso2g0118 1319 Gene3D BRCT domain 1110 1207 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0118 Gso-Chr2 1222978 1229626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0118 129 244 Core DNA Replication Machinery Family AT4G02110 61.207 2.14e-36 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso2g0118 BRCT 6.4e-07 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0118 K10728 - gmx:100799144 2623.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0118 2 1222978 1229626 Gso2g0118 2 1222978 1229626 ECH
Gso2g0118 2 1222978 1229626 Gso10g0124 10 1311919 1318596 GST