Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0100 ATGTTGCTGCTCGTCGTTTCCACCGCTTTAACCGGTGCGTTGAAATGGTTGCTTGTGTTGCTATCTTGCATGGTGTGGTTTGTGGTTGATTATGGTGCGTGTGGCAGAGCACTGCAGCTGGAAGCACCTTCTTTGTCTCCAGCTGCAGCACCTGTTGTTGCTGTTGATGATCTGCCACTGCCGACGAATGCTCATGGGTTAAAGCATTTGCCTGCACCGATTCCGTCACGCGCCAATTTCACCAAAGGGAGAGGAGAATTACAGCCCCCGGTTTCCGGGTTTAAGAATATTGCCCCTATGCATCCCATTGCTGATGCTATTCCTTCTGCTCTCGCTCAGCCACCATTGTCCCCTTATGTTTCCGATTGTTGCAAACAAGACATGGTGTGGAAACGTGGCAGTGAGGTTTGCCACTGTGCTTATCCCATAAAGCTAGACCTACTTCTTTTGAATGTCTCTGAAAACCCCGACCAGAATGCTTTTCTCAATGGTTTGGCCACCCAACTTGAGCTGCAGACTACCCAAATTGAAATTATTAAATTTTATCTACTCAGCTTATCGACGTTGAATATATCAATGGATATCACTCCACATAAAGGGATCAGTTTCTCGGCCGAGGAAGCAGCTAAAATAAACTCATTGCTTTTACTGCATAAGGTTCAACTAGACCGCAGATTTGTGGGCGACTACAAAGTAATCAATATAACCTGGTTTAAACCTCCACCTCATTCTCCAGCTCCTACAATTTCTACATCACCTATGAAAGCTCCCCAGAGACGAGCACCTACAGCTACATTGTCGAGTACTTCAGACAGGGGAAGGCGTTCAAACTTGCTTCTTATTCTTGGAATTGTCACTGGCATACTCTTCATTTCCATTGTATGTGTACTTATACTTTGCTTATGCACAATGAGGCCAAAAACAAAAACACCTCCCACAGAAACTGAAAAGCCAAGGATTGAAAGTGCAGTTTCTGCTGTTGGGTCTCTTCCCCACCCAACCAGTACCCGCTTTATTGCTTATGAAGAACTTAAAGAAGCAACAAATAATTTTGAACCAGCAAGTGTACTTGGAGAAGGAGGTTTTGGTAGAGTTTATAAAGGTGTCTTAAATGATGGAACTGCTGTTGCAATTAAGAGACTTACTAGTGGAGGGCAACAAGGTGATAAAGAATTTTTAGTTGAGGTTGAGATGCTTAGCCGGTTGCATCATCGTAACCTTGTAAAACTAGTGGGATACTATAGCAACCGTGACTCATCACAAAATCTACTTTGCTACGAGCTTGTCCCAAATGGAAGCTTGGAGGCCTGGCTTCATGGTCCGCTGGGAATAAATTGCCCTTTGGATTGGGACACTAGAATGAAGATCGCCCTTGATGCTGCAAGAGGACTTGCATACATGCATGAAGATTCACAGCCCTGTGTAATACACAGAGATTTCAAGGCATCTAACATATTGCTTGAAAACAACTTTCATGCTAAAGTTGCAGATTTTGGTCTAGCTAAACAGGCACCTGAAGGCAGAGCTAATTATCTATCTACTAGAGTCATGGGCACATTTGGGTATGTAGCGCCTGAATATGCTATGACTGGACACCTGCTAGTTAAAAGCGATGTTTATAGCTACGGCGTTGTCTTGCTGGAACTGTTGATCGGAAGGAAACCAGTGGATATGTCACAGCCATCTGGACAAGAAAACCTTGTTACTTGGGCAAGGCCAATTCTTAGAGATAAGGACAGCTTGGAAGAACTTGCTGATCCAAGGCTTGGGGGAAGGTACCCAAAGGAAGATTTTGTACGTGTTTGCACTATTGCTGCAGCCTGTGTTGCTCCTGAAGCAAGCCAACGACCTGCAATGGGTGAAGTGGTACAATCACTTAAAATGGTGCAGCGGGTCACAGAATCTCATGATCCTGTGTTAGCGTCATCCAATACACGGCCCAACCTGAGACAGTCCTCTACCACTTACGATTCTGATGGGACATCTTCAATGTTTTCTTCAGGTCCTTACTCTGGTCTAAGTACCTTTGACTATCACAACATTTCGAGAACGGCTGTTTTCTCTGAAGATCTTCATGAAGGACGATGA 2088 0.4454 MLLLVVSTALTGALKWLLVLLSCMVWFVVDYGACGRALQLEAPSLSPAAAPVVAVDDLPLPTNAHGLKHLPAPIPSRANFTKGRGELQPPVSGFKNIAPMHPIADAIPSALAQPPLSPYVSDCCKQDMVWKRGSEVCHCAYPIKLDLLLLNVSENPDQNAFLNGLATQLELQTTQIEIIKFYLLSLSTLNISMDITPHKGISFSAEEAAKINSLLLLHKVQLDRRFVGDYKVINITWFKPPPHSPAPTISTSPMKAPQRRAPTATLSSTSDRGRRSNLLLILGIVTGILFISIVCVLILCLCTMRPKTKTPPTETEKPRIESAVSAVGSLPHPTSTRFIAYEELKEATNNFEPASVLGEGGFGRVYKGVLNDGTAVAIKRLTSGGQQGDKEFLVEVEMLSRLHHRNLVKLVGYYSNRDSSQNLLCYELVPNGSLEAWLHGPLGINCPLDWDTRMKIALDAARGLAYMHEDSQPCVIHRDFKASNILLENNFHAKVADFGLAKQAPEGRANYLSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLIGRKPVDMSQPSGQENLVTWARPILRDKDSLEELADPRLGGRYPKEDFVRVCTIAAACVAPEASQRPAMGEVVQSLKMVQRVTESHDPVLASSNTRPNLRQSSTTYDSDGTSSMFSSGPYSGLSTFDYHNISRTAVFSEDLHEGR* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0100 695 ProSitePatterns Protein kinases ATP-binding region signature. 357 379 IPR017441 GO:0005524
Gso2g0100 695 MobiDBLite consensus disorder prediction 244 270 - -
Gso2g0100 695 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672|GO:0006468
Gso2g0100 695 MobiDBLite consensus disorder prediction 634 663 - -
Gso2g0100 695 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ALE2 79 695 - -
Gso2g0100 695 SUPERFAMILY Protein kinase-like (PK-like) 327 628 IPR011009 -
Gso2g0100 695 MobiDBLite consensus disorder prediction 249 270 - -
Gso2g0100 695 Pfam Protein kinase domain 354 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso2g0100 695 Gene3D Phosphorylase Kinase; domain 1 315 428 - -
Gso2g0100 695 PANTHER OS01G0750732 PROTEIN 79 695 - -
Gso2g0100 695 Gene3D Transferase(Phosphotransferase) domain 1 429 646 - -
Gso2g0100 695 ProSiteProfiles Protein kinase domain profile. 351 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0100 Gso-Chr2 1063646 1071803 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0100 10 695 Receptor kinase-like Gene Family AT4G02010 65.919 0.0 920
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Gso2g0100 Pkinase 1.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0100 - - gmx:100792818 1345.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0100 2 1063646 1071803 Gso2g0100 2 1063646 1071803 ECH
Gso2g0100 2 1063646 1071803 Gso10g0104 10 1120582 1127688 GST
Gso19g1828 19 47002556 47009229 Gso2g0100 2 1063646 1071803 PCT
Gso3g1866 3 44216653 44224398 Gso2g0100 2 1063646 1071803 PCT
Gso2g0100 2 1063646 1071803 Gso19g1828 19 47002556 47009229 PCT
Gso2g0100 2 1063646 1071803 Gso3g1866 3 44216653 44224398 PCT