Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0088 ATGAAACAAAGAATAATTTTGTGGGAAGAGGATGCTAAATCATTGTGTGCTAAAACAGAACAGTGCTCCGCATGTGGTTGGAAGGAGGGGGGAACAAGCCGTGGCGCTTCGCATGATCGCATCTCAGGAACCAAAGCTGGTTTCTATGGAACTCAAGACACTCTCTATGATCACAAAGGCCTTCATTACTTCAACAACTGCTCTATTCAAGGTTCTGTTCTTTTCATCTTCGGTTCCGCCAGGTGGCTTCCATCACTGCTCAAAAACTGCATAGCAACAGGTAGTGGGCAGATTTATCTTGGAAGAGCATGGGGAGATTATTCCAGAGTTATTTTCTCATACACCTACATGGACAACATAGTTCTCCCCAAAGGATGGAGTGATTGGGGTGACCAAAAGCGTGACTCGAGAGTATATTATGGAGAATACAAGTGTAGTGGGCCAGGAGCTAACTTGGCTGGAAGTGTGCCATGGGCACGGGTACTGACGGATGAAGAGGCCAAGCCTTTTATTGGAATGCAATTCATTGAACGGGACACTTGGCTTGCTAGCCCCTAA 558 0.4624 MKQRIILWEEDAKSLCAKTEQCSACGWKEGGTSRGASHDRISGTKAGFYGTQDTLYDHKGLHYFNNCSIQGSVLFIFGSARWLPSLLKNCIATGSGQIYLGRAWGDYSRVIFSYTYMDNIVLPKGWSDWGDQKRDSRVYYGEYKCSGPGANLAGSVPWARVLTDEEAKPFIGMQFIERDTWLASP* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0088 185 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 2 83 - -
Gso2g0088 185 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 87 182 - -
Gso2g0088 185 PANTHER PECTINESTERASE 87 182 - -
Gso2g0088 185 PANTHER PECTINESTERASE 2 83 - -
Gso2g0088 185 Gene3D - 88 185 IPR012334 -
Gso2g0088 185 Gene3D - 32 87 IPR012334 -
Gso2g0088 185 SUPERFAMILY Pectin lyase-like 44 182 IPR011050 -
Gso2g0088 185 Pfam Pectinesterase 45 81 IPR000070 GO:0030599|GO:0042545
Gso2g0088 185 Pfam Pectinesterase 95 178 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0088 Gso-Chr2 950380 951598 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0088 28 182 Carbohydrate Esterase AT1G05310 35.204 5.38e-38 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0088 K01051 - gmx:102665411 398.282