Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0087 ATGGAGACCATGAATGTTCAGGTGATGAGAAGCTTATCAGATATGGTAATTAAAAAAGGACCATGGACTGAGGAAGAAGATTCTGTTCTGATCAACTATGTCAACGTCCACGGCGAAGGCCACTGGAACTCCCTCGCTCGCTCTTCAGGTTTAAAGCGAACGGGCAAAAGCTGCAGACTAAGATGGTTCAACTACTTGCGCCCAAATGTTCGACGTGGGAACATCACCCTTCAAGAACAGCTCTTGATTCTCGAACTCCATTCCCACTGGGGCAATCGGTGGGCCAAAATAGCAGAACAACTGCCAGGGAGAACAGACAATGAGATAAAGAACTATTGGAGGACTCGAGTGGTGAAGCAGGCTAAGCAACTCAAATGTCATGTAAACAGCAAACAGTTCAGGGACGCCTTGCGTTTCGTTTGGATGCCGCGCCTTATGGAGCAGATTCAGGCTTCTTCTTCTTCCTATGGCCTTGATCAAACCACGTTGTGCAACACTCAAACCCACAGAGACAACTCAATGGTTTCATCGTACTCATCAGAGGTTGATCTTCAGCCTCCTTCTCTTTCTGATACAAGTATAACTTCATCATCTTACAATTTAATTGGTGATGGAGGCCTGTCAACGGAAAGTGCAGAAAAGGGGTCCATATACTCTCTTTGGCAGCATTGGGACTACTCTGACATACAAGCATTTGAGCCATGCAATGGTTTTGGTGATGCAGACTTGTGGACCGATGAAAACATGTGGTTCTTGCAGCAGCATCTTGCTGATGAATTATGA 783 0.4585 METMNVQVMRSLSDMVIKKGPWTEEEDSVLINYVNVHGEGHWNSLARSSGLKRTGKSCRLRWFNYLRPNVRRGNITLQEQLLILELHSHWGNRWAKIAEQLPGRTDNEIKNYWRTRVVKQAKQLKCHVNSKQFRDALRFVWMPRLMEQIQASSSSYGLDQTTLCNTQTHRDNSMVSSYSSEVDLQPPSLSDTSITSSSYNLIGDGGLSTESAEKGSIYSLWQHWDYSDIQAFEPCNGFGDADLWTDENMWFLQQHLADEL* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0087 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 70 IPR017930 -
Gso2g0087 260 PANTHER MYB TRANSCRIPTION FACTOR-RELATED 9 253 - -
Gso2g0087 260 SMART sant 71 119 IPR001005 -
Gso2g0087 260 SMART sant 18 68 IPR001005 -
Gso2g0087 260 Gene3D - 16 72 - -
Gso2g0087 260 Gene3D - 76 117 - -
Gso2g0087 260 Pfam Myb-like DNA-binding domain 19 66 IPR001005 -
Gso2g0087 260 Pfam Myb-like DNA-binding domain 72 115 IPR001005 -
Gso2g0087 260 ProSiteProfiles Myb-like domain profile. 14 66 IPR001005 -
Gso2g0087 260 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 9 253 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gso2g0087 260 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Gso2g0087 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 121 IPR017930 -
Gso2g0087 260 CDD SANT 21 66 IPR001005 -
Gso2g0087 260 SUPERFAMILY Homeodomain-like 17 113 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0087 Gso-Chr2 948047 949578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0087 14 259 MYB Transcription Factor Family AT2G47190 47.170 4.73e-76 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso2g0087 Myb_DNA-binding 2.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0087 K09422 - gmx:778040 520.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0087 2 948047 949578 Gso2g0087 2 948047 949578 ECH
Gso2g0087 2 948047 949578 Gso10g0094 10 996067 997725 GST
Gso19g1842 19 47125827 47127748 Gso2g0087 2 948047 949578 PCT
Gso3g1878 3 44338241 44339634 Gso2g0087 2 948047 949578 PCT
Gso2g0087 2 948047 949578 Gso19g1842 19 47125827 47127748 PCT
Gso2g0087 2 948047 949578 Gso3g1878 3 44338241 44339634 PCT