Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0076 ATGGAAGCTAAATTTGGAGCTGAGGCTTATCATTTTTACGGTGTGGGTGCTTCCTCGGATTTGAGGGGTGTGGGGAAGAGGTCCTCAGAGTGGGATTTGAATGATTGGAGATGGGATGGTGATCTGTTCATCGCTAGCCGGCTGAATCCGGTGCCGGCCGATGGTGTTGGAGTGGGACAGCAATTTTTCCCTATTGGGTCCGGGATCCCGGTGGCCGGAGGCCCCTCCAACAGTTCTTCCACCTCTGAGGAAGTAGATCCTAGGGATCCCAAGGCGAACAAGGAAGGGGACAAGAAAAGGAGAGTTATTGTGCTGGAGGATGATGGGTTGAATGAGGAAGGGGGTACTCTTAGTTTAAAGCTTGGTGGCCATGCTTCTGCAGTGGTGGATAGGGAAGTTGGGAGCTGGGACGGTACGAATGGGAAGAAAAGTAGAGTGTCGGGAAGTACTTCAAATCGAGCTGTTTGTCAGGTGGAGGACTGCAGTGCTGATCTGAGCAAAGCTAAGGATTATCACAGACGGCATAAAGTTTGTGAGATGCACTCCAAGGCCAGTAGGGCGCTTGTGGGAAATGCAATGCAGAGATTCTGTCAACAATGTAGTAGGTTTCACCTACTTCAAGAGTTTGATGAAGGAAAGAGAAGCTGCCGAAGACGCTTGGCAGGGCATAATAAACGAAGAAGGAAAACAAATCATGAAGCTGTTCCTAATGGAAGTTCATTAAATGATGATCAGACTAGTAGCTATCTGTTGATAAGTTTATTGAAGATACTTTCAAATATGCATTCTGACAGGTCAGATCAGACTACAGATCAGGATCTACTAACTCATATTCTGAGGAGTCTTGCTAGTCAGAATGGTGAACAAGGGGGCAAGAACATAGCTAACCTTTTGCGAGAACCAGAGAATTTGTTGAGAGAAGATGGTTCATCAAGGAAGTCAGAGATGATGTCAACTTTATTCTCCAATGGTTCTCAAGGCTCTCCATCCAATATAAGACAACATGAAACTGTATCTATGGCTAAAATGCAGCAACAAGTGATGCATGCACATGATGCTGGGGCTTCTGATCAGCAAATTACATCTTCTATAAAGCCCAGCATGTCAAACAGTCCTCCGGCCTACTCAGAAGCCAGAGACAGTACCGCTGGACAGATCAAGATGAATAATTTTGATTTGAATGACATATATATTGACTCAGATGATGGTATGGAAGATTTAGAAAGATTGCCCGTCTCTACAAATCTTGTGACTAGCTCTCTTGATTACCCATGGGCACAACAAGATTCCCATCAATCAAGTCCACCTCAAACAAGTGGAAATTCTGATTCTGCATCTGCCCAGTCTCCTTCCAGTTCCAGTGGAGAAGCTCAGAGTCGCACAGATCGAATTGTTTTTAAGCTCTTCGGTAAAGAGCCAAATGATTTTCCTCTTGTACTTAGAGCACAGATTCTTGACTGGTTATCTCACAGTCCTACTGATATGGAGAGCTACATACGGCCTGGTTGTATTGTTTTGACCATTTATCTGCGTCAGGCTGAGGCGTTGTGGGAGGAACTTTGCTATGATCTGACTTCCAGTTTGAATAGGCTGTTGGATGTCTCAGATGATACTTTTTGGAGAAATGGATGGGTTCACATCAGGGTGCAGCATCAGATGGCCTTCATTTTTAATGGTCAAGTTGTCATAGATACCTCCTTACCTTTCAGAAGTAACAATTATAGCAAGATTTTGACTGTTAGTCCAATTGCTGTACCAGCATCAAAGAGAGCTCAATTTTCTGTTAAGGGTGTCAACCTGATACGCCCTGCCACTAGGTTAATGTGTGCTTTAGAAGGGAAATATCTGGTCTGTGAAGATGATCATATGTCAATGGATCAATGCTCCAAAGAACCTGATGAACTTCAGTGCGTCCAGTTTTCATGTTCTGTCCCTGTGATGAATGGAAGAGGATTTATTGAGATTGAGGACCAGGGTTTGAGTAGCAGCTTTTTTCCTTTCATTGTTGTGGAGGAGGATGTTTGCTCAGAAATCTGTACACTTGAGCCTCTTCTAGAATTAAGTGAAACTGATCCAGATATTGAAGGGGCAGGAAAAATCAAAGCCAAAAATCAAGCCATGGATTTTATTCATGAAATGGGTTGGCTTCTTCACAGAAGCCAGTTGAAATTAAGGATGGTTTCTAGTGTGGATCTCTTTCCATTGAAACGGTTCAAGTGGCTTATTGAGTTTTCCATGGATCATGATTGGTGTGCAGCAGTGAGAAAACTGTTGAACCTACTGTTTGATGGAACTGTAAATACAGGAGATCATCCTTCCTTGTATCTTGCGCTTTCAGAGATGGGTCTCCTTCACAAAGCTGTAAGGAGAAATAGCAAGCATTTAGTGGAGTTGCTTTTGAGATATGTTCCTGAGAATATTTCTGATAAACTAGGACCTGAAGAGAAGGCACTGGTTGATGGAGAGAATCAGACCTTCTTGTTTAGACCTGATGTTGATGGTACTGCTGGTTTGACACCACTCCATATAGCAGCCGGGAAAGATGGTTCTGAGGATGTACTTGATGCTTTGACTAATGATCCTTGCATGGTTGGAATTGAAGCGTGGAAAAATGCTCGTGACAGCACAGGTTCGACACCTGAGGATTATGCCCGTTTACGTGGCCATTATGCTTACATTCACTTGGTGCAGAAAAAAATTAACAAGAAACAAGGAGCAGCTCATGTGGTGGTTGAGATTCCAAGCAATATGACAGAGAACAATACAAACAAGAAGCAAAATGAGTTATCCACTATCTTTGAGATTGGAAAGCCTGAAGTAAGGCGTGGCCAAGGGCACTGTAAGCTTTGTGACAACAGAATTTCTTGCAGAACTGCAGTAGGCAGGTCTATGGTATACAGACCTGCAATGCTCTCAATGGTGGCAATAGCGGCAGTCTGTGTCTGTGTGGCCCTTCTGTTTAAAAGCTCACCTGAAGTCATATGTATGTTCCGACCCTTCAGATGGGAAAATTTGGACTTTGGAACAAGCTAA 3033 0.4365 MEAKFGAEAYHFYGVGASSDLRGVGKRSSEWDLNDWRWDGDLFIASRLNPVPADGVGVGQQFFPIGSGIPVAGGPSNSSSTSEEVDPRDPKANKEGDKKRRVIVLEDDGLNEEGGTLSLKLGGHASAVVDREVGSWDGTNGKKSRVSGSTSNRAVCQVEDCSADLSKAKDYHRRHKVCEMHSKASRALVGNAMQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNKRRRKTNHEAVPNGSSLNDDQTSSYLLISLLKILSNMHSDRSDQTTDQDLLTHILRSLASQNGEQGGKNIANLLREPENLLREDGSSRKSEMMSTLFSNGSQGSPSNIRQHETVSMAKMQQQVMHAHDAGASDQQITSSIKPSMSNSPPAYSEARDSTAGQIKMNNFDLNDIYIDSDDGMEDLERLPVSTNLVTSSLDYPWAQQDSHQSSPPQTSGNSDSASAQSPSSSSGEAQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPTDMESYIRPGCIVLTIYLRQAEALWEELCYDLTSSLNRLLDVSDDTFWRNGWVHIRVQHQMAFIFNGQVVIDTSLPFRSNNYSKILTVSPIAVPASKRAQFSVKGVNLIRPATRLMCALEGKYLVCEDDHMSMDQCSKEPDELQCVQFSCSVPVMNGRGFIEIEDQGLSSSFFPFIVVEEDVCSEICTLEPLLELSETDPDIEGAGKIKAKNQAMDFIHEMGWLLHRSQLKLRMVSSVDLFPLKRFKWLIEFSMDHDWCAAVRKLLNLLFDGTVNTGDHPSLYLALSEMGLLHKAVRRNSKHLVELLLRYVPENISDKLGPEEKALVDGENQTFLFRPDVDGTAGLTPLHIAAGKDGSEDVLDALTNDPCMVGIEAWKNARDSTGSTPEDYARLRGHYAYIHLVQKKINKKQGAAHVVVEIPSNMTENNTNKKQNELSTIFEIGKPEVRRGQGHCKLCDNRISCRTAVGRSMVYRPAMLSMVAIAAVCVCVALLFKSSPEVICMFRPFRWENLDFGTS* 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0076 1010 MobiDBLite consensus disorder prediction 84 100 - -
Gso2g0076 1010 SUPERFAMILY SBT domain 154 234 IPR036893 GO:0003677|GO:0005634
Gso2g0076 1010 MobiDBLite consensus disorder prediction 426 459 - -
Gso2g0076 1010 MobiDBLite consensus disorder prediction 351 383 - -
Gso2g0076 1010 ProSiteProfiles Zinc finger SBP-type profile. 153 230 IPR004333 GO:0003677
Gso2g0076 1010 SUPERFAMILY Ankyrin repeat 782 894 IPR036770 -
Gso2g0076 1010 MobiDBLite consensus disorder prediction 350 383 - -
Gso2g0076 1010 MobiDBLite consensus disorder prediction 220 242 - -
Gso2g0076 1010 Pfam SBP domain 156 229 IPR004333 GO:0003677
Gso2g0076 1010 MobiDBLite consensus disorder prediction 67 100 - -
Gso2g0076 1010 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 1009 IPR044817 GO:0003677
Gso2g0076 1010 Gene3D - 752 914 IPR036770 -
Gso2g0076 1010 MobiDBLite consensus disorder prediction 314 332 - -
Gso2g0076 1010 Gene3D - 146 217 IPR036893 GO:0003677|GO:0005634
Gso2g0076 1010 MobiDBLite consensus disorder prediction 307 332 - -
Gso2g0076 1010 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 17 1009 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0076 Gso-Chr2 866001 873354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0076 1 1010 SBP-box Gene Family AT3G60030 54.272 0.0 976
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gso2g0076 SBP 4.9e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0076 - - gmx:100814273 2003.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0076 2 866001 873354 Gso2g0076 2 866001 873354 ECH
Gso2g0076 2 866001 873354 Gso10g0081 10 899804 907768 GST