Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0073 ATGAAAGGAAAAGTACTAGGTTCCGCAGTTTCTCTCATCCTAGTGGTGGGTGTGGTAATTGGCGTGGTTGCTGTAGTTCAAAGCCCAAAGGGCGTGAACAACAACAACAATGGAGGAGAATTGAAAACCAGCAACAGGGCCGTGACAGCGTTGTGCCAAGGCTCAGACGACCAGAAACTGTGCCACGAGGTTCTGTCATCTTCGAACAGCACAGACCCAAAGGAGTACATCGCAACCGTGGTGAGAACCTCGATGGACAGCGTGATCAAAGCGTTCAACATGAGCGACAGGCTGACGGTGGAACACGGCAACAGCAGCGCCGGAATGAAGATGGCTCTGGAGGATTGTAAGGACTTGTTGCAGTCCGCCATCCACGACCTAGAGGCCTCAGGCGTGTTGGTCAAAGAGAGCAGCCTACAGGACGTGCACCAGCGCACCGCCGAGCTCAAGAACTGGTTGGGAGCCGTTGTTGCCTACCAGCAATCGTGCCTGGACGGCTTCGACACCGACGGCGAGAAGAAGGTGCAGGAGCAGCTGCAATCTGGGAGCTTGGACAACGTTGGAAAACTCACTGGCTTGGCACTCGATGTCGTGTCAGGGATTTCACACATTCTCCAATCCTTGGACTTGAACCTTGCTCTCAAGCCCGCCTCTCGCCGCCTTCTGGAGGTGGACCAGGAAGGCTACCCCACTTGGGTCTCCGCTGCTGATCGCAAGCTCTTGGCTCAGCTCAACGACGGTGCAGTCTTGCCCCATGCTACTGTGGCTAAGGATGGCAGTGGTCAATTTACCACTGTTTTGGACGCTATTAACTCCTACCCTAAGAAACACCAAGGCAGATACATTATCTACGTTAAGGCTGGTATCTACGACGAGTACATCACCGTTGACAAGAAGAAGCCCAATCTTTTCATCTACGGTGATGGCCCCACAAATACCATCATCACTGGCCGCAAGAACTTTCACGAGGGTACCAAGACAATGAGAACCGCCACCTTCTCTACTGTTGCCGAGGATTTCATGGCGAAGTCAATTGCATTTGAGAACACCGCTGGTGCAGAAGGACACCAAGCAGTGGCACTTCGCGTGCAAGGTGATCGTTCAGTGTTCTTTGATTGTGCTATGCGCGGTTACCAAGACACATTGTATGCCCACGCCCATCGTCAGTTCTACCGCAATTGCGAAATCTCTGGAACAATTGATTTCATTTTCGGATACTCCACCACCTTGATCCAAAACTCGAAGATCTTGGTGAGGAAGCCCATGGCAAATCAGCAGAACATAGTGGTGGCAGATGGCACAGGGCAGAAGAACATGCCCACAGGAATAGTCCTCCATAACTGCGAGATCATGCCGGACCCTACCCTCTTGGCAGACCGCTTGAGCGTGAAGACTTACTTGGCCAGGCCATGGAAGGCATTCTCAAGGGCAGTGTTCATCGAGAATGTTATCGGGGACTTGATTCAGCCAGATGGTTATATTCCATGGAACCCAATTGAACCAAACACACAGGATTGCTACTTCGCTGAGTTTGGCAACACTGGACCAGGTTCCGTTGCTCAAGCAAGAGCCAAGTTTGGCAAAGGTCTCATTAGCAAGCAGGAGGCTGCACAATTCACTGCTGAGCCTTGGCTCCAAGCTAGCACTTGGTTGCCTGCTGCTGGCGTTCCTTTCGATGCTAGCTTCACCAAAGCTTAA 1698 0.5206 MKGKVLGSAVSLILVVGVVIGVVAVVQSPKGVNNNNNGGELKTSNRAVTALCQGSDDQKLCHEVLSSSNSTDPKEYIATVVRTSMDSVIKAFNMSDRLTVEHGNSSAGMKMALEDCKDLLQSAIHDLEASGVLVKESSLQDVHQRTAELKNWLGAVVAYQQSCLDGFDTDGEKKVQEQLQSGSLDNVGKLTGLALDVVSGISHILQSLDLNLALKPASRRLLEVDQEGYPTWVSAADRKLLAQLNDGAVLPHATVAKDGSGQFTTVLDAINSYPKKHQGRYIIYVKAGIYDEYITVDKKKPNLFIYGDGPTNTIITGRKNFHEGTKTMRTATFSTVAEDFMAKSIAFENTAGAEGHQAVALRVQGDRSVFFDCAMRGYQDTLYAHAHRQFYRNCEISGTIDFIFGYSTTLIQNSKILVRKPMANQQNIVVADGTGQKNMPTGIVLHNCEIMPDPTLLADRLSVKTYLARPWKAFSRAVFIENVIGDLIQPDGYIPWNPIEPNTQDCYFAEFGNTGPGSVAQARAKFGKGLISKQEAAQFTAEPWLQASTWLPAAGVPFDASFTKA* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0073 565 PANTHER PECTINESTERASE 4 562 - -
Gso2g0073 565 PANTHER PECTINESTERASE 4 562 - -
Gso2g0073 565 CDD PMEI-like_3 50 202 - -
Gso2g0073 565 Pfam Plant invertase/pectin methylesterase inhibitor 47 196 IPR006501 GO:0004857
Gso2g0073 565 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 47 199 IPR035513 -
Gso2g0073 565 Gene3D Invertase/pectin methylesterase inhibitor family protein 42 202 IPR035513 -
Gso2g0073 565 Pfam Pectinesterase 253 547 IPR000070 GO:0030599|GO:0042545
Gso2g0073 565 TIGRFAM PME_inhib: pectinesterase inhibitor domain 41 178 IPR006501 GO:0004857
Gso2g0073 565 ProSitePatterns Pectinesterase signature 2. 396 405 IPR033131 -
Gso2g0073 565 SUPERFAMILY Pectin lyase-like 252 559 IPR011050 -
Gso2g0073 565 SMART PMEI_2 43 197 IPR006501 GO:0004857
Gso2g0073 565 Gene3D - 247 562 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0073 Gso-Chr2 836645 838987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0073 3 557 Carbohydrate Esterase AT3G62170 40.917 2.39e-136 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0073 K01051 - gmx:100808559 1100.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0073 2 836645 838987 Gso10g1267 10 38520507 38523576 GST
Gso3g1895 3 44481882 44483936 Gso2g0073 2 836645 838987 PCT
Gso2g0073 2 836645 838987 Gso19g1858 19 47272926 47275109 PCT