Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0064 ATGGGCAAAGCCTCTAGTTCTTCCTCCTCTTCTATCTCCAGCTGCAGAAACCCTTCCAATTATTCAACTGCATCCTCTCTCACACACCAACATAGTGATCAAGACCACCTTCGCACAGATCTTAGGCTTGGACTAAGCATTTCCACTACTCATGATCAACATGTTGGCTCTTCTAGTTCAGGGGGGCACTGGCAACCGATGCAGCCACATCTAAGTAGTTTTTCACAAGCTACTGAAGTGAATCATTGCAGCGATCATACCAGCTTCTTTGTGAAGGTGTACATGGAAGGCATTCCGATTGGTAGAAAACTCAACCTGTTAGCTCATGATGGCTACCACGAGTTAGTAAAGACCCTTGAACAGATGTTTGACACTACCATTTTGTGGGGAACTGAAATGGACGGAGTGCAACCAGATAGGTGCCATGTTCTAACTTATGAAGATGGAGAAGGAGATTTGATTATGGTTGGGGATGTCCCTTGGGAGATGTTCTTATCAGCTGTAAAGAGGTTGAAGATCACAAGGGTGGAGACATTCGGGTGA 543 0.453 MGKASSSSSSSISSCRNPSNYSTASSLTHQHSDQDHLRTDLRLGLSISTTHDQHVGSSSSGGHWQPMQPHLSSFSQATEVNHCSDHTSFFVKVYMEGIPIGRKLNLLAHDGYHELVKTLEQMFDTTILWGTEMDGVQPDRCHVLTYEDGEGDLIMVGDVPWEMFLSAVKRLKITRVETFG* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0064 180 Gene3D - 82 179 - -
Gso2g0064 180 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 15 - -
Gso2g0064 180 MobiDBLite consensus disorder prediction 1 35 - -
Gso2g0064 180 MobiDBLite consensus disorder prediction 1 30 - -
Gso2g0064 180 PANTHER AUXIN-INDUCED PROTEIN 2 180 - -
Gso2g0064 180 Pfam AUX/IAA family 79 175 IPR033389 -
Gso2g0064 180 SUPERFAMILY CAD & PB1 domains 85 174 - -
Gso2g0064 180 ProSiteProfiles PB1 domain profile. 88 178 IPR000270 GO:0005515
Gso2g0064 180 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 180 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0064 Gso-Chr2 756980 758306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0064 92 173 B3 DNA Binding Superfamily AT4G23980 38.554 5.61e-13 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gso2g0064 AUX_IAA 3.5e-28 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0064 2 756980 758306 Gso10g1277 10 38754481 38756104 GST
Gso19g1869 19 47383583 47384809 Gso2g0064 2 756980 758306 PCT
Gso3g1905 3 44592764 44594072 Gso2g0064 2 756980 758306 PCT
Gso2g0064 2 756980 758306 Gso19g1869 19 47383583 47384809 PCT
Gso2g0064 2 756980 758306 Gso3g1905 3 44592764 44594072 PCT