Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0062 ATGCGTATATTGAAGGAGCTCATACCCAATTGCAATAAGACGGACAAAGCATCAATGCTTGATGATGCCATCGAATATCTTAAGACCCTAAAGCTTCAGATACAGATGATGTCAATGGATGCTGGATTTTGTATACCTTTTATGATGCTACGTAATGCTGCTCATCATATGATGAACACACCCCTTTTACATCAGTTAATGGGACTTGGAATGGGGTTCAGGCCAGACACAGCCATACCTTGTAGCCTCCCTCAGTTCCCTATTACACCTTTGCCTGCCATCACTGACAACAGAGTTCACTTTTTTGGTTTCCCTAACCAAGTGCCACCCATGCCAATTTCTCATGCACCTTTCATTCCAATGCTTGGAAATCCTTCTACACAAACCCCTCTTGCAACTAGCACAGCTATCAACCTGGCAGAAAACCCTGCTTCTTCCCAGTTAACAACTCTAATGGCCTCAGTCCCCAAGAACTTGTATCTAAGTGGGCAATCTGAATATGCAACAAAGCAAGCACCGAGTCAAGTTTCCCTTCACCACTAG 543 0.4401 MRILKELIPNCNKTDKASMLDDAIEYLKTLKLQIQMMSMDAGFCIPFMMLRNAAHHMMNTPLLHQLMGLGMGFRPDTAIPCSLPQFPITPLPAITDNRVHFFGFPNQVPPMPISHAPFIPMLGNPSTQTPLATSTAINLAENPASSQLTTLMASVPKNLYLSGQSEYATKQAPSQVSLHH* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0062 180 Gene3D - 1 40 IPR036638 GO:0046983
Gso2g0062 180 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 179 - -
Gso2g0062 180 PANTHER TRANSCRIPTION FACTOR PIF3 1 179 IPR044273 GO:0003700|GO:0006355
Gso2g0062 180 Pfam Helix-loop-helix DNA-binding domain 3 30 IPR011598 GO:0046983
Gso2g0062 180 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 2 42 IPR036638 GO:0046983
Gso2g0062 180 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 30 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0062 Gso-Chr2 738533 740613 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0062 1 46 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 71.739 2.22e-17 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso2g0062 HLH 0.00031 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0062 K12126 - gmx:100783269 369.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0062 2 738533 740613 Gso10g1280 10 38788099 38790599 GST
Gso19g1870 19 47397076 47399930 Gso2g0062 2 738533 740613 PCT
Gso3g1906 3 44604209 44607156 Gso2g0062 2 738533 740613 PCT
Gso2g0062 2 738533 740613 Gso19g1870 19 47397076 47399930 PCT
Gso2g0062 2 738533 740613 Gso3g1906 3 44604209 44607156 PCT