Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0055 ATGGACGAAGAGGGTGGTTCAAGAGGAAAAGCCAATAAGGATGAAGATCAAGAGCATGTTAAGTACAGAGGGGTACGTAGGAGGCCATGGGGAAAATTTGCAGCAGAGATTCGTGACTCAATGAGACAAGGTCAAAGGTTGTGGCTTGGAACATTCAACACTGCAGAGGAAGCAGCTAGAGCCTATGATAGAGCTGCGTATGCCATGAGAGGTCCCTTTGCAGTCCTCAATTTCCCTAATGAATACCCCCCTTTAGCAATTGGTGCTTCCTCTTCTTCTTCTTCTTCTTCTTCCAATGCTTCTTCGGCTTCGGCTTCGGCTTCACCCTCTTCAAGTCATGTGGAAGGAAGTGGAAGGAGTGAGCAAGCAAACCAAGTGATTGAGTTTGAGTACTTTGATGACAAGTTGTTGGAGGAGCTTCTTGGTTACGAAGACAAAAATAAACCTGACAAGTGA 456 0.4583 MDEEGGSRGKANKDEDQEHVKYRGVRRRPWGKFAAEIRDSMRQGQRLWLGTFNTAEEAARAYDRAAYAMRGPFAVLNFPNEYPPLAIGASSSSSSSSSNASSASASASPSSSHVEGSGRSEQANQVIEFEYFDDKLLEELLGYEDKNKPDK* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0055 151 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Gso2g0055 151 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Gso2g0055 151 PANTHER DNA-BINDING DOMAIN 10 142 IPR044808 GO:0003700|GO:0009873
Gso2g0055 151 MobiDBLite consensus disorder prediction 1 25 - -
Gso2g0055 151 Gene3D AP2/ERF domain 20 80 IPR036955 GO:0003700|GO:0006355
Gso2g0055 151 Pfam AP2 domain 21 71 IPR001471 GO:0003700|GO:0006355
Gso2g0055 151 SMART rav1_2 21 85 IPR001471 GO:0003700|GO:0006355
Gso2g0055 151 SUPERFAMILY DNA-binding domain 21 80 IPR016177 GO:0003677
Gso2g0055 151 ProSiteProfiles AP2/ERF domain profile. 21 79 IPR001471 GO:0003700|GO:0006355
Gso2g0055 151 MobiDBLite consensus disorder prediction 86 122 - -
Gso2g0055 151 PANTHER - 10 142 - -
Gso2g0055 151 CDD AP2 21 80 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0055 Gso-Chr2 682333 683191 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0055 16 148 AP2-EREBP Transcription Factor Family AT3G23230 55.639 4.47e-40 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso2g0055 AP2 2.8e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0055 - - gmx:100781117 244.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0055 2 682333 683191 Gso2g0055 2 682333 683191 ECH
Gso2g0055 2 682333 683191 Gso10g0063 10 717547 718416 GST