Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0054 ATGGATTGTTCCTCCGTTCTCCACTCATCAAACTCCTCATTCTTCCCCTTCAACGAAAACGACCCCGAAGAGATGCTCCTCTACGGCATGATCACGTCATACCAAGAAAAAGTGATCATCAAAGAAGAGGAAGTGAACTCAGAGGAAAACAACAACAAGAATAAGAAAAACAACAACAAGAGCAGCTTCCGCGGCGTGCGGAGTCGCCCGTGGGGGAAGTTCGCGGCGGAGATAAGGGACTCCACGCGGCACGGCGTGAGGGTGTGGCTTGGGACATTCGACAGCGCCGAGGCCGCGGCGCTGGCCTATGACCAAGCCGCGTTCTCCATGAGGGGCTCCGCCGCGGTGCTCAACTTCCCCGTGGAGAAGGTGAAGGAGTCATTAAGAGACATGAATTGCACTCTCTCTCAGCTTGATGGGTCTTCTCCCGTCGTGGCCTTGAAGAGGAGACACTCCTTAGGACGCAAAATGGCTGCTAAGAAGAAGAAGGTGGAAGAGACTCATGGTGATGTTCGGTTAGAGAATGTGGTTGTGTTGGAAGACCTAGGGGCTGAGTATTTGGAACACTTGTTGATGATGTCCTCTCATGATACTACTAGTTGTTCTTGGTGA 612 0.5212 MDCSSVLHSSNSSFFPFNENDPEEMLLYGMITSYQEKVIIKEEEVNSEENNNKNKKNNNKSSFRGVRSRPWGKFAAEIRDSTRHGVRVWLGTFDSAEAAALAYDQAAFSMRGSAAVLNFPVEKVKESLRDMNCTLSQLDGSSPVVALKRRHSLGRKMAAKKKKVEETHGDVRLENVVVLEDLGAEYLEHLLMMSSHDTTSCSW* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0054 203 PRINTS Ethylene responsive element binding protein signature 63 74 IPR001471 GO:0003700|GO:0006355
Gso2g0054 203 PRINTS Ethylene responsive element binding protein signature 86 102 IPR001471 GO:0003700|GO:0006355
Gso2g0054 203 SUPERFAMILY DNA-binding domain 61 122 IPR016177 GO:0003677
Gso2g0054 203 SMART rav1_2 62 126 IPR001471 GO:0003700|GO:0006355
Gso2g0054 203 ProSiteProfiles AP2/ERF domain profile. 62 120 IPR001471 GO:0003700|GO:0006355
Gso2g0054 203 PANTHER DNA-BINDING DOMAIN 10 193 IPR044808 GO:0003700|GO:0009873
Gso2g0054 203 MobiDBLite consensus disorder prediction 45 66 - -
Gso2g0054 203 Pfam AP2 domain 62 112 IPR001471 GO:0003700|GO:0006355
Gso2g0054 203 CDD AP2 63 121 IPR001471 GO:0003700|GO:0006355
Gso2g0054 203 Coils Coil 31 58 - -
Gso2g0054 203 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 10 193 - -
Gso2g0054 203 Gene3D AP2/ERF domain 62 122 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0054 Gso-Chr2 663834 664914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0054 15 199 AP2-EREBP Transcription Factor Family AT3G23240 56.989 6.13e-68 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso2g0054 AP2 1.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0054 K14516 - gmx:100780576 352.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0054 2 663834 664914 Gso2g0054 2 663834 664914 ECH
Gso2g0054 2 663834 664914 Gso10g0062 10 703145 704088 GST
Gso3g1365 3 39576659 39577707 Gso2g0054 2 663834 664914 PCT