Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0050 ATGGTTAGAGCTCCTTGTTGTGAAAAGATGGGATTGAAGAAGGGTCCTTGGACCCCAGAGGAAGATCAAATCCTCATGTCATACATCCAAAAACATGGCCATGGAAATTGGCGTGCCCTCCCAAAGCTTGCAGGGTTATTAAGGTGTGGCAAGAGCTGCAGGCTAAGGTGGATTAACTATTTAAGGCCAGATATCAAGAGAGGAAATTTTTCAAGCGAAGAAGAGGAAATTATCATTAAGATGCATGAGTTGCTGGGGAACAGGTGGTCAGCAATTGCAGCAAAATTACCAGGAAGAACTGACAATGAAATAAAAAATGTGTGGCACACCCACTTGAAGAAGAGGCTACTGAATTCAGAAATCCAAAAAAGGGTTTCCAAGCCAAGAATCAAACGATCTGATTCCAATTCCAGCACACTAACTCAATTAGAACCTACATCATCAGCATGCACTACTTCTTTAAGTGACTTTTCATCATTTAGTGAAGGGACTAAAAACATGGACAACATGATCAAGAGTGAAGACATAGAGTCTGTGGAGACAATAATGCCTCCAATTGATGAAAGCTTTTGGTCAGAGGCAACAGTGGATTATGAAAGCTCCACCATGATGACATCAAATTCTTGGACAATTTCAAATGAATTAGCACCCCCTCAATACCAATTTAATTCAGTGGAAAGCTTCCAACAACGAAGTGTTGATTATAATGGTTCAAACTATGATGATGGCATGGATTTCTGGTATGACATATTCATCAAATCAGGGGAGTCAATCGAATTGCCAGAGTTCTGA 792 0.404 MVRAPCCEKMGLKKGPWTPEEDQILMSYIQKHGHGNWRALPKLAGLLRCGKSCRLRWINYLRPDIKRGNFSSEEEEIIIKMHELLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLLNSEIQKRVSKPRIKRSDSNSSTLTQLEPTSSACTTSLSDFSSFSEGTKNMDNMIKSEDIESVETIMPPIDESFWSEATVDYESSTMMTSNSWTISNELAPPQYQFNSVESFQQRSVDYNGSNYDDGMDFWYDIFIKSGESIELPEF* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0050 263 CDD SANT 69 112 IPR001005 -
Gso2g0050 263 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso2g0050 263 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gso2g0050 263 PANTHER MYB-RELATED TRANSCRIPTION FACTOR LBM1 1 254 - -
Gso2g0050 263 CDD SANT 16 61 IPR001005 -
Gso2g0050 263 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Gso2g0050 263 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 254 - -
Gso2g0050 263 Gene3D - 13 66 - -
Gso2g0050 263 SMART sant 13 63 IPR001005 -
Gso2g0050 263 SMART sant 66 114 IPR001005 -
Gso2g0050 263 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso2g0050 263 MobiDBLite consensus disorder prediction 132 154 - -
Gso2g0050 263 Gene3D - 69 143 - -
Gso2g0050 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso2g0050 263 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso2g0050 263 MobiDBLite consensus disorder prediction 124 154 - -
Gso2g0050 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0050 Gso-Chr2 597059 599391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0050 1 263 MYB Transcription Factor Family AT1G06180 49.254 2.17e-82 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso2g0050 Myb_DNA-binding 1.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0050 K09422 - gmx:100794205 533.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0050 2 597059 599391 Gso2g0050 2 597059 599391 ECH
Gso2g0050 2 597059 599391 Gso10g0059 10 658173 660462 GST
Gso19g1366 19 42462507 42464728 Gso2g0050 2 597059 599391 PCT
Gso3g1371 3 39651879 39653848 Gso2g0050 2 597059 599391 PCT