Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0047 ATGGCAGATCTTGCTAGCTTTGGGAGTCATGAGCGTGATGTTGAGCAAGCTGTCTTTAGAAGATACTTGCGTCCTGAAAAGGATTATCTGTCATTTTCACTTATTTATAAAAAGGGGGAACGATCACTTGATCTGATTTGCAAGGACCAAGCTGAGGTAGAGGTATGGTTTTCAAGCCTTAAGGCATTAATTTCCCGTGGAGAGCGTATTAGGCGTGGAAAAAGTGATTTATCCAATAGTAATTGTTTTGACTCTCTCTTACAGGAAAGTGTTGACTTAATTCCAAATGATCGTCCTAATGCTGGAACACTAGAGTTTGCATCAAGCATTGCCCGTGGCAGGTTTTCTTTTGAATCAGTATCTCATGAATCTACATCATCTTGCTCTAGATCAGATACAAATATGCCAGTAAGGACAAGTTGTGGAGATGGTTCTCGTGTTAGTGTATCAAGTGTTAGCCACTCAAGTAGTGTAGGATCAGGACTAGATGACATAGAATCTCTAGGTGATGTTTATATATGGGGAGAGGTTTGGGTAGATGGCAATTCATCTGATGGATTGGGGAGTCTAGCCTCTTGTAAGACCGATGTGCTGACTCCTAAACCATTGGAGTCTGATGTTGTTCTTGATGTCCATCAGATTGGGCCTGGTGATCGTCACATTGCTCTAGTTACAAGGCAGGGAGAGGTTTTTACTTGGGGAGAGGACTCTGGTGGAAGACTTGGTCATGGATTTGAAAAAGATTTTGGTAGACCTCATCTTGTGGAGTCCCTGGCAATTACCAATGTGACTTTTGTTGCATGTGGCGAGTATCATTCATGTGCTGTGTCATCATCTGGTGACCTATTCACCTGGGGTGATGGTACACATGGTGCAGGACTTCTTGGTCATGGCACTGATGTTAGCTACTGGATACCAAAAAGGGTTAGTGGTCCTTTAGAGGGACTTCAGGTTGTATCTGTAGCATGTGGAACATGGCATTCAGCATTAGCAACCTCCAATGGGAAGTTGTTTACCATTGGTGATGGAAGATTTGGTGTATTGGGCCATGGAGACCGAGATAGTGTGGCATATCCAAAGGAGGTACAATTATTGAGTGGACATAAGGCTATTAAGGTTGCATGTGGAGTGTGGCACTCAGCAGCCATTATAGAGGTTATGGGTCCTTCTGGTTCAAACACTTCAGCCAAGAGGCTCTTCACATGGGGTGATGGCGACCAATATCGTTTGGGTCATGTTAACAAGGAAACTTACCTTGAACCAACTTGTGTAGCTGCAGTTGCTGAGTATAATTTTCACCAGGTTGCATGTGGGTACACTATGACTGTTGCACTCACTACATCTGGTCATGTTTTTACTATGGGAGGCACAGCATATGGTCAACTAGGAAATCCAAATTCTGATGGAAAAGTGCCAATTCTAGTCCGAGGTAAGTTAGTAGGAGAGTTTGTGGAGGAAATATCATGTGGGGCCAATCATGTTGCTGTGTTGACTTCAAGAAGTGAATTATATACTTGGGGGAGAGGTGCCAATGGAAGACTAGGACATGGAGACACAGATGATCAGAAATCTCCAACACTGGTGGAAGCCTTGAAAGACAGGCATATTAAGAACATCTCATGTGGTTCGACCTTTACATCTTGCATATGCCTACATAAATGGGTTTCTGGAGTTGACCAATCTGTTTGCTCTGATTGTCGACAACCATTTGGTTTTACCCGAAAAAGGCGTAATTGCTATCATTGTGGATTGGTGTATTGCCATCCTTGTAGTTCAAAAAAGGCTTCAAAAGCAGCACTGGCTCCAACACCTAGCAAACCACATCGTGTGTGTGATGCTTGTTATGCTAAGCTAAAAGGTTCTGATAGTGCTTCCAATTTTAATAGGGACATTAGTCGTCCATCTAGTTCCATATATGGAAGGGAAAGTTTTCACCGGGGAGAGGTAAGGTCTTCAAGAGTTCTCTTGCCTCCTACCATAGAACCGGTTAAATACCTTGAGATTAGGACTAATAAGCCTGGAAGTACACATGACTCCATAGTCCGAGCTGCTCAAGTTCCTACGACTTTACAATTGAAAGATGTTTCATTTCCAATTTCATTGAGTTCTGTGCAGAATGTTTACAAACCCGTTATACAGCCAAGTCAACCTCCAACTCCACCAACATCAGCTACTCCAATACCCATGTCACCATATGCTAGAAGACCACCAAGCCCACCGCGTTCTACCTCCCCTGGATTTTCAAGAAGCCTTATTGATAATTTAAGGAAGAAAAATGATCATTTGAATCAAGAAGTTACAAAATGGCAAAACAAAAATCAAAATTTGGAGCAGAAGAGTGACATGCAAGATATGAAGATTCAGGAGCTTCAGAAAAATATTGAAGAAGCCATGTCACAATTTGGAGAGGAATCTTCTAAGCTTAGAGAAGCAAAGGAATTTATTAAGTCCTTGGCAGATAAGTTGAGGGAAGTGACTGAGAAGTTGCCACCTGAGATTCCTGACAAAGAGACCTTGAGAACCATGCATGCTCAAGCTGAAGAATTTCTACATGAAGAAAAAGATTTTGAATCTTCTTCCTCCCCACAGAGCCTTGAGTCTGAGCAACAAAGTGCACCTGATGTACCTGCCTCAGATAGTGACTCTTCAAAACTCCAACAGCAAAGAGTGGAAGGAAATGATGATGCTTCTGGGGTTGTTCCATCTATAGATGGAGAAAATATTCTTGAAGAAAGCAGCAACTCATCTGTATCTAGTCTAGTAGTGATTCCACCAAGCTCAGGAAATGGTTCAAAATTGCATGACTCTGGTATACCTGTGAAAGAAGGAGAAAAATCAGTCATTGAACAATTTGAGCATGGTGTTTATGGCACACTCGTAGTACTACCTAGTGGTTACAAAGTTTTCAAACGAATTAGATTCAGTAAACGAAGATTCAACGAGCAGCAAGCAGAAGAATGGTGGAACCAGAACAAAGATAAGGTGCTTAGTAAATACAGTCCACCAGCCGCAAAAAATTCAAAAACTGGATCATCTATTACCCCTCCACATGCTGAAGAGAATAGTGAGGCTTTACCTTCTTCCTAA 3087 0.4211 MADLASFGSHERDVEQAVFRRYLRPEKDYLSFSLIYKKGERSLDLICKDQAEVEVWFSSLKALISRGERIRRGKSDLSNSNCFDSLLQESVDLIPNDRPNAGTLEFASSIARGRFSFESVSHESTSSCSRSDTNMPVRTSCGDGSRVSVSSVSHSSSVGSGLDDIESLGDVYIWGEVWVDGNSSDGLGSLASCKTDVLTPKPLESDVVLDVHQIGPGDRHIALVTRQGEVFTWGEDSGGRLGHGFEKDFGRPHLVESLAITNVTFVACGEYHSCAVSSSGDLFTWGDGTHGAGLLGHGTDVSYWIPKRVSGPLEGLQVVSVACGTWHSALATSNGKLFTIGDGRFGVLGHGDRDSVAYPKEVQLLSGHKAIKVACGVWHSAAIIEVMGPSGSNTSAKRLFTWGDGDQYRLGHVNKETYLEPTCVAAVAEYNFHQVACGYTMTVALTTSGHVFTMGGTAYGQLGNPNSDGKVPILVRGKLVGEFVEEISCGANHVAVLTSRSELYTWGRGANGRLGHGDTDDQKSPTLVEALKDRHIKNISCGSTFTSCICLHKWVSGVDQSVCSDCRQPFGFTRKRRNCYHCGLVYCHPCSSKKASKAALAPTPSKPHRVCDACYAKLKGSDSASNFNRDISRPSSSIYGRESFHRGEVRSSRVLLPPTIEPVKYLEIRTNKPGSTHDSIVRAAQVPTTLQLKDVSFPISLSSVQNVYKPVIQPSQPPTPPTSATPIPMSPYARRPPSPPRSTSPGFSRSLIDNLRKKNDHLNQEVTKWQNKNQNLEQKSDMQDMKIQELQKNIEEAMSQFGEESSKLREAKEFIKSLADKLREVTEKLPPEIPDKETLRTMHAQAEEFLHEEKDFESSSSPQSLESEQQSAPDVPASDSDSSKLQQQRVEGNDDASGVVPSIDGENILEESSNSSVSSLVVIPPSSGNGSKLHDSGIPVKEGEKSVIEQFEHGVYGTLVVLPSGYKVFKRIRFSKRRFNEQQAEEWWNQNKDKVLSKYSPPAAKNSKTGSSITPPHAEENSEALPSS* 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0047 1028 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 373 383 IPR000408 -
Gso2g0047 1028 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 557 619 IPR017455 -
Gso2g0047 1028 Coils Coil 752 828 - -
Gso2g0047 1028 MobiDBLite consensus disorder prediction 860 893 - -
Gso2g0047 1028 Pfam FYVE zinc finger 553 618 IPR000306 GO:0046872
Gso2g0047 1028 SMART fyve_4 551 620 IPR000306 GO:0046872
Gso2g0047 1028 Pfam Transcription factor regulating root and shoot growth via Pin3 945 999 IPR013591 -
Gso2g0047 1028 MobiDBLite consensus disorder prediction 907 933 - -
Gso2g0047 1028 MobiDBLite consensus disorder prediction 990 1028 - -
Gso2g0047 1028 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 501 552 IPR000408 -
Gso2g0047 1028 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 335 386 IPR000408 -
Gso2g0047 1028 MobiDBLite consensus disorder prediction 852 938 - -
Gso2g0047 1028 ProSiteProfiles PH domain profile. 1 65 IPR001849 -
Gso2g0047 1028 SUPERFAMILY RCC1/BLIP-II 174 554 IPR009091 -
Gso2g0047 1028 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 228 279 IPR000408 -
Gso2g0047 1028 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 449 500 IPR000408 -
Gso2g0047 1028 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 280 334 IPR000408 -
Gso2g0047 1028 Gene3D - 13 72 IPR011993 -
Gso2g0047 1028 MobiDBLite consensus disorder prediction 712 750 - -
Gso2g0047 1028 Pfam Transcription factor BRX N-terminal domain 803 834 IPR027988 -
Gso2g0047 1028 SUPERFAMILY PH domain-like 17 64 - -
Gso2g0047 1028 PRINTS Chromosome condensation regulator RCC1 signature 230 246 IPR000408 -
Gso2g0047 1028 PRINTS Chromosome condensation regulator RCC1 signature 280 296 IPR000408 -
Gso2g0047 1028 PRINTS Chromosome condensation regulator RCC1 signature 321 337 IPR000408 -
Gso2g0047 1028 PRINTS Chromosome condensation regulator RCC1 signature 337 351 IPR000408 -
Gso2g0047 1028 PRINTS Chromosome condensation regulator RCC1 signature 438 456 IPR000408 -
Gso2g0047 1028 PRINTS Chromosome condensation regulator RCC1 signature 496 517 IPR000408 -
Gso2g0047 1028 MobiDBLite consensus disorder prediction 993 1028 - -
Gso2g0047 1028 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 397 448 IPR000408 -
Gso2g0047 1028 PANTHER CHROMOSOME CONDENSATION REGULATOR RCC1 REPEAT PROTEIN 16 1007 - -
Gso2g0047 1028 CDD FYVE_like_SF 563 615 - -
Gso2g0047 1028 Pfam Regulator of chromosome condensation (RCC1) repeat 398 445 IPR000408 -
Gso2g0047 1028 Pfam Regulator of chromosome condensation (RCC1) repeat 334 383 IPR000408 -
Gso2g0047 1028 Pfam Regulator of chromosome condensation (RCC1) repeat 448 497 IPR000408 -
Gso2g0047 1028 Pfam Regulator of chromosome condensation (RCC1) repeat 279 330 IPR000408 -
Gso2g0047 1028 Pfam Regulator of chromosome condensation (RCC1) repeat 502 549 IPR000408 -
Gso2g0047 1028 Pfam Regulator of chromosome condensation (RCC1) repeat 228 276 IPR000408 -
Gso2g0047 1028 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 559 629 IPR013083 -
Gso2g0047 1028 MobiDBLite consensus disorder prediction 713 743 - -
Gso2g0047 1028 ProSiteProfiles BRX domain profile. 945 1000 IPR013591 -
Gso2g0047 1028 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 16 1007 - -
Gso2g0047 1028 Gene3D - 391 558 IPR009091 -
Gso2g0047 1028 Gene3D - 112 390 IPR009091 -
Gso2g0047 1028 SUPERFAMILY FYVE/PHD zinc finger 553 623 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0047 Gso-Chr2 576077 583823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0047 924 999 Major Intrinsic Protein MIP AT1G31880 35.526 9.04e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0047 - - gmx:100778984 1877.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0047 2 576077 583823 Gso10g0056 10 633833 641151 GST