Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0041 ATGGCAGAGACGAAAGAAGGTTCAGGTTCGGAGATGTCTCTGAAGGATCAGGGCAACGAGTTTTTCAAGTCAGGAAAGTATCTCAAAGCTGCTGCACTCTACACTCAAGCCATCAAGCTAGACCCTTCTAACCCTACCCTCTATAGTAATCGTGCTGCAGCACTACTGCAATTGGATAAGCTTAATAAAGCTCTAGATGATGCAGAGATGACAATCAAATTAAAACCCCAATGGGAAAAGGGATATTTCAGGAAGGGAAGCATATTGGAGGCTATGAAACGATATGATGATGCTTTAGCTTCCTTTCAGATAGCATTGCAGTATAACCCACAAAGTCAAGAAGTATCAAAAAAGATAAAGAAGATAAACCAACTGGTGAAAGATAGCAAGCGAGCTCAAGAAGTGGAGAATATGAGATCCAATGTTGACATGGCCAAACATTTAGATACATTCAAAACTGAAATGTCTGGGAAGTATGGGTCTGAGGAATGCTTGAAAGATTTGTTCTCATTCCTTGTTGAGACTATGGAGACTGCTGTAAAATCATGGCATGAAACTTCTTCAGTGGATGCTAAAGTTTACTTTCTTCTTGATAAGGAAAAGACAGACACCGATAAGTATGCCCCAGTTGTGAATATTGATAAGGCCTTTGAATCACCACATACACATGGCAACTGCTTTGCATTTCTTAGGCAGTATGCTGAGGAGTCTTTCTCCAAAGCAGCCTGCTTGGTGACTCCCAAAAACATCATTGCTTATCCGCAGGTCTGGAAGGGCCAAGGATCAAGAAAGTGGAAACATGCCCAGAGTGATGGTTTCTTTGTTCAATTTGAGTCACCTTCCCTGCGAAAGTTGTGGTTTATACCCAGTTCGAATGAAAAGGGACAGACCTGGTGCAGGGATCCAGAGGTTTTGGACATTGGTGCTCATGAAGTTCTTCCCCGGTTATTCAAAGAAAAGCAGCCCCGTTCTTAG 975 0.4236 MAETKEGSGSEMSLKDQGNEFFKSGKYLKAAALYTQAIKLDPSNPTLYSNRAAALLQLDKLNKALDDAEMTIKLKPQWEKGYFRKGSILEAMKRYDDALASFQIALQYNPQSQEVSKKIKKINQLVKDSKRAQEVENMRSNVDMAKHLDTFKTEMSGKYGSEECLKDLFSFLVETMETAVKSWHETSSVDAKVYFLLDKEKTDTDKYAPVVNIDKAFESPHTHGNCFAFLRQYAEESFSKAACLVTPKNIIAYPQVWKGQGSRKWKHAQSDGFFVQFESPSLRKLWFIPSSNEKGQTWCRDPEVLDIGAHEVLPRLFKEKQPRS* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0041 324 PANTHER STRESS-INDUCED-PHOSPHOPROTEIN 1 13 320 - -
Gso2g0041 324 SMART tpr_5 79 112 IPR019734 GO:0005515
Gso2g0041 324 SMART tpr_5 11 44 IPR019734 GO:0005515
Gso2g0041 324 SMART tpr_5 45 78 IPR019734 GO:0005515
Gso2g0041 324 Coils Coil 51 71 - -
Gso2g0041 324 Pfam TPR repeat 18 58 - -
Gso2g0041 324 Gene3D Tetratricopeptide repeat domain 6 163 IPR011990 GO:0005515
Gso2g0041 324 SUPERFAMILY TPR-like 13 122 IPR011990 GO:0005515
Gso2g0041 324 Pfam Tetratricopeptide repeat 80 111 IPR013105 -
Gso2g0041 324 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
Gso2g0041 324 ProSiteProfiles TPR repeat profile. 79 112 IPR019734 GO:0005515
Gso2g0041 324 PANTHER TPR REPEAT CONTAINING PROTEIN 13 320 IPR045248 GO:0006457|GO:0030544|GO:0051879
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0041 Gso-Chr2 483895 492604 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0041 7 157 U-box Gene Family AT3G07370 25.150 3.56e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0041 - - gmx:100790717 655.981