Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0025 ATGCCAGTGAGACAGATGAGGGAGAGCTCAGAACAACACCTTGTGATCAAACCCCATTTGCAGAACCCCATGAATGGAGCTAAGAAGGTTCCTAGAGCTGTTCAAAATGGCAAAGGTCCACCACCACCGCCACTGCCACAACAGGAACTACCCCACAACCAAACTTCACCTCATGTAAGGAACAAGGGGAGAAGAAGGAGCAGAGGTGGAGGAAGAAAATGTGATCAAGGAGATGTTTTGATGAGACCTATTGTGGCAAGTGGTGTTGAAAATGGAAGCACCATGTGTGGTGAAATAGAGATGAGTTGCCCCACTTCAAGCAAGTCTTTGAGCTTTGCTCCTAGGCCTGGCTATGGACAAGTTGGGACAAAGTGCATTGTGAAGGCTAACCACTTCTTTGCAGAGTTACCAGACAAGGACTTGAACCAGTATGATGTCAGTATTACCCCCGAAGTGTCTTCCAAAGCAGTGAACAGGTCCATTATAGCAGAACTTGTGAGGCTGTATAAAGAGTCTGACCTTGGGATGAGGCTTCCAGCATATGATGGCAGAAAAAGTCTGTACACTGCAGGGCCACTTCCCTTTTCCTGGAGAGAGTTCAAGATAAAGGTTGTGGATGATGAGGATAGAGTTAATGGCCCCAAAAGGGAAAGAGATTATAGAGTGGTGATCAAGTTTGTTGCCAGGGCCAATTTGCACCACTTGGGCCAGTTTCTAGCGGGTAAATGTGCTGAAGCTCCACAAGAGGCACTCCAAATTCTTGACATTGTATTAAGAGAGCTATCATCTAAGAGGTTTTGCCCAATTGGGAGGTCCTTCTTTTCACCTGATATTAGAACACCACAACGGCTTGGAGAGGGTTTGGAATCGTGGTGTGGATTTTACCAAAGCATAAGGCCTACTCAGATGGGTCTTTCACTCAATATTGATATGGCTTCTGCTGCGTTCATTGAACCTCTTCCAGTTGTGGAATATGTTGGCCAGCTATTAGGAAAAGATATTCTGTCGAGGCAATTGTCTGATGCTGATCGCATTAAAATTAAGAAAGCCCTTAGAGGAGTTAAAGTCGAAGTAACCCACCGAGGGAGTGTTAGAAGAAAGTATCGAGTTTCTGGTTTGACTTGTCAACCAACCAGAGAACTCGTGTTTCCTGTTGATGAGAATTCAACTATGAAGTCAGTAGTTGAATACTTTCAAGAGATGTATGGTTTCACAATTAAATATACTCACCTTCCTTGCCTTCAAGTAGGAAATCAAAAGAAGGCAAATTATTTACCTATGGAGGCCTGCAAAATTGTTGAGGGACAACGATATACAAAAAGGTTGAATGAGAAGCAAATCACTGCTCTCCTGAAAGTTACTTGTCAAAGACCTCGTGATCGAGAAAATGACATTTTGCAGACCATTCAGCACAATGCTTATGGTCAAGATCCTTATGCAAAGGAATTTGGGATTAAAATTAGTGAAAAGCTAGCTTCTGTAGAAGCGCGAATTCTCCCTGCCCCATGGCTTAAATATCATGAAAGTGGGAAAGAAAAGAATTGTTTACCCCAAGTTGGTCAGTGGAATATGATGAACAAGAAAATGATAAATGGGATGACTGTCAGCCAGTGGGCATGCATAAATTTTTCACGAAGCGTACAAGACAGTGTTGCTCGCACTTTTTGTACCGAGCTAGCTCAAATGTGCCAAGTATCTGGCATGGAATTTAATCCAGAGCCTGTTATCCCCATCTACAATGCCAAACCTGAGCATGTGGAGAAAGCTTTGAAGCATGTTTACCATGCGTCAACAAACAAAACCAAAGGAAAGGAATTGGAGCTTTTGTTAGCAATATTGCCGGACAACAATGGTTCTCTCTATGGTGATCTCAAGCGTATTTGTGAAACCGACCTTGGTTTAATTTCTCAATGTTGTTTGACAAAGCATGTCTTTAAGATCACAAAGCAGTATTTGGCTAATGTGTCTCTGAAAATCAATGTCAAGATGGGAGGTAGAAACACCGTTCTTGTTGATGCTGTAAGCTGTAGAATACCATTGGTTAGTGACATACCAACTATAATATTTGGAGCAGATGTTACCCATCCTGAAAATGGAGAAGACTCCAGCCCTTCAATAGCAGCCGTTGTAGCATCTCAAGACTGGCCTGAAGTGACGAAATATGCCGGTTTAGTGTGTGCTCAAGCTCATAGACAGGAACTCATACAAGATTTGTACAAAATGTGGCACGACCCTGTTCGTGGCTTAGTCAGTGGTGGCATGATCCGAGACTTGTTGATTTCCTTTAGAAAGGCAACAGGGCAGAAGCCTCTAAGAATTATCTTTTATAGGGATGGTGTAAGTGAAGGGCAGTTTTACCAAGTTCTACTTTATGAGTTGGATGCAATTCGGAAGGCATGTGCTTCTTTAGAACCAAACTATCAACCTCCAGTAACTTTCATAGTTGTACAAAAAAGACACCATACCCGGTTGTTTGCAAATAACCACAGGGACAGGAACAGTACAGATAAGAGTGGAAATATATTGCCTGGGACTGTTGTTGATTCCAAAATCTGTCATCCAACAGAATTTGATTTTTATCTGTGCAGTCATGCTGGCATCCAGGGTACGAGTCGTCCAGCTCATTATCATGTTCTGTGGGATGAAAACAACTTCACAGCAGATGGAATTCAGTCTTTGACAAACAATCTCTGTTATACATATGCCAGGTGTACACGCTCCGTATCTGTTGTTCCTCCAGCGTATTATGCACATTTGGCAGCTTTTCGAGCGCGGTTCTATATGGAGCCAGACCTGCAGCAGGAGAATGGCTCCTCAGGTGGTGGCTCCAAGGCAACAAGAGCAGGTGGGGTGTGTGGTGGGGTGAAGCCATTGCCAGCATTGAAAGAAAATGTGAAGAGAGTCATGTTTTATTGTTAG 2919 0.432 MPVRQMRESSEQHLVIKPHLQNPMNGAKKVPRAVQNGKGPPPPPLPQQELPHNQTSPHVRNKGRRRSRGGGRKCDQGDVLMRPIVASGVENGSTMCGEIEMSCPTSSKSLSFAPRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVSITPEVSSKAVNRSIIAELVRLYKESDLGMRLPAYDGRKSLYTAGPLPFSWREFKIKVVDDEDRVNGPKRERDYRVVIKFVARANLHHLGQFLAGKCAEAPQEALQILDIVLRELSSKRFCPIGRSFFSPDIRTPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVVEYVGQLLGKDILSRQLSDADRIKIKKALRGVKVEVTHRGSVRRKYRVSGLTCQPTRELVFPVDENSTMKSVVEYFQEMYGFTIKYTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNEKQITALLKVTCQRPRDRENDILQTIQHNAYGQDPYAKEFGIKISEKLASVEARILPAPWLKYHESGKEKNCLPQVGQWNMMNKKMINGMTVSQWACINFSRSVQDSVARTFCTELAQMCQVSGMEFNPEPVIPIYNAKPEHVEKALKHVYHASTNKTKGKELELLLAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKITKQYLANVSLKINVKMGGRNTVLVDAVSCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKMWHDPVRGLVSGGMIRDLLISFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHRDRNSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDLQQENGSSGGGSKATRAGGVCGGVKPLPALKENVKRVMFYC* 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0025 972 Pfam Argonaute linker 1 domain 268 317 IPR014811 -
Gso2g0025 972 PANTHER PROTEIN ARGONAUTE 10 62 971 - -
Gso2g0025 972 SUPERFAMILY Ribonuclease H-like 599 930 IPR012337 -
Gso2g0025 972 ProSiteProfiles Piwi domain profile. 608 929 IPR003165 GO:0003676
Gso2g0025 972 SMART Piwi_a_2 608 929 IPR003165 GO:0003676
Gso2g0025 972 MobiDBLite consensus disorder prediction 36 50 - -
Gso2g0025 972 CDD Piwi_ago-like 478 928 IPR045246 -
Gso2g0025 972 MobiDBLite consensus disorder prediction 1 77 - -
Gso2g0025 972 CDD PAZ_argonaute_like 319 433 - -
Gso2g0025 972 SMART DUF1785_2 267 319 IPR014811 -
Gso2g0025 972 SMART PAZ_2_a_3 324 456 IPR003100 GO:0005515
Gso2g0025 972 Gene3D - 677 972 IPR036397 GO:0003676
Gso2g0025 972 ProSiteProfiles PAZ domain profile. 320 434 IPR003100 GO:0005515
Gso2g0025 972 SUPERFAMILY PAZ domain 314 474 IPR036085 GO:0005515
Gso2g0025 972 Gene3D - 498 671 - -
Gso2g0025 972 Pfam N-terminal domain of argonaute 124 258 IPR032474 -
Gso2g0025 972 Gene3D paz domain 313 438 - -
Gso2g0025 972 Pfam Argonaute linker 2 domain 460 506 IPR032472 -
Gso2g0025 972 Pfam Mid domain of argonaute 517 594 IPR032473 -
Gso2g0025 972 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 62 971 - -
Gso2g0025 972 Pfam Piwi domain 609 928 IPR003165 GO:0003676
Gso2g0025 972 Pfam PAZ domain 346 450 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0025 Gso-Chr2 290618 299879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0025 1 972 Eukaryotic Initiation Factors Gene Family AT5G43810 80.402 0.0 1641
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0025 K11593 - gmx:100819073 1956.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0025 2 290618 299879 Gso10g0026 10 300810 310165 GST