Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0015 ATGCTTGAAAACATTGGATCTTTTCTTGAAAGGAAAAGAGAGAAGCAATTCTCTGGTGTTGGTTTCAACTTTCAACCTCTGGGCAATACACACTCCGGTTTAATTAGAAATTCAGTACATACAATGGTTGGATTGGAACTCATACCCATAGGTACAATATTGACTGTTCTAAACAGCCAGATTGTGAAAACAGCTAATGCAGCAATCGATGTTGTTATTGATAAAGAAAGTTTCAAAGTCCTCTCAAAACACCTGCTTGATATTGCCCCAGTCCTAAAGGAATTGCAGCTTCAGGAATTGAATGAGTCTGAAGCTGCAAGGGTTGCTCTGGAGTCTCTTGAATCAGATATCAAAAAGGCGAATAATTTGGTTGAGAAGTACAGGAACCGTGGCCGTTTCTACCTGCTGTTGAGGTGCAGATACATAGTCAAGGAAGTTGAACAAGTCACAAGAGACATTGGAAGGTCTCTGGCTGCACTGTCCATTGCAAACACTGAAGTCCTATCAAGAATTTCTGATCAGGTCAACAGGTTACAGAGTGAAATGCAAACGGTGGAGTTTGAGGCTTCACAATCTCAGCTTCAAATTGTTGACAAGTTGAACCATGGAATTAGGGAGCAGAAACTCGATCAGGCTTTTGCAAATGACGTGCTTGAGGAAATAGGAAGGGCAGTTGGGGTGCCGGTGGAGCCTTCAGAGGTAAGCAAAGAGCTAGCCAGCATTAGGAAGGAAATGGAAGAAGCAGCCACCAGGAAAGAAAGAGCTGAGTTTATTTTTTTGGAGCAGATCATTGAGCTACTATCTCGAGCTGATGCTGCAAGGGATTATGAAGAAGTTAAGAAGCAATACTTTAGAAGGGTTCAGGTAATTGAGAGATATGATTCAAGGGAAAAATATATCCGACCACTTAATTCTTTCCTTTGTCCCATAACTGGAGCTGTTATGGTAGATCCTGTCAGCCTTTGCACTGGTACTACATGTGAGAGATCCGCCATTGAAGCTTGGTTTGATGATGGAAACAGGATTGACCCAGAAACAAAAGAGGTTCTTGAAGATACTACCTTGAGATCCAATGTTCGATTAAGAGAATCCATAGAAGAGTGGAGAGAAGTCAATTACTGCTTTGGAATAAGGTCTATCAAGGAAAGCCTATTATCCAATTCTGACTTATTAGTGCAAGAATCTCTGAGCCAAATTCAGGCTCTCATTAGAGAGAATTCCATTAACAAGGATTGGATTTCTATAGGAGAGCTTACTGATATTATTATCTCTATCCTTGGGGAATCTGATTCCACAGATGCCAAGATGAAGATCTTGATTACTTTGAAGGATTCTGTACAGGGGCATGCAAGAAACAAGGAAAAAGTGGTTGAATCTCAAGGTTGGTATCACATTATTTCCTGCTTAGGGAGTGACTCTAGAATTTCAAAGGAAGCAATTGATTTGCTATATGAGTTACTTCAAAACCGATCTGGTTGGAATAAAAGCTTCTGCAAAAAACTCTCTGATCATCCTAGTGCAGTTTCTTACCTTGTTACTCTTCTAAAGGGTCCTGTAAGCAATTCAGCTGGGGTTTCAGAAAAGATTTTGATGGAGCTTTCTGAGATAGACGAGGAAAACATTTCAGCTGCTGCAAAGTTTGGCTGGTACAAACCTCTTACTGATCGCATGATTCAAGGATCGGAGTCTTCACGAATGTCAATGGCGAGAGCCATAGTTAATTTGGAGTTGAAAGATTTGAACTTGAAACTCCTTGGCGAGCAAGGAGTTATACTTCCTTTGCTAGAAATGCTATCTGGCAGCATTGAATCTAAAGAACTGTCACTGTCATCCCTGGTTAAACTAGCAAAATTGCATGCCAATAAGGGGATTATTGCAGCATCTGGAGGTGTGCCTCTTGTTTTAGATTTGATGTTCTTTTGCAGGATGCGGCCATTCATTACCATTAAATGTTGTGAAATCCTTGAGAAGCTAGCTTCAGATGATGATGGAATTGATTTCTTAGTTGATGGAAAAGGAAATCAACTTGAGTTAGAAAACATCATCACCAATTTGCTAGCTCTAACTCAGGGTCCAAACTCAGCTCACTACCGAAAGCCTGCATTACGTGCTCTTCTTGGAATTTGTAAGTTTGAGACTGGTTTAGTGAAGAAGGCAGTTCTGGCAGCCAATGGGATATCTCTAATCCTCCCCATTCTTGATGATTCTGACTCAGAAATCAGGGAAACTGCCATAAATATTCTGTTTCTTTTCTCCCAACATGAACCACAAGGACTAGTTGAATACCTCTTCAGTCCAAGAAGACTACAAGCTTTAGTTGGGTTTCTTGAGAATGACGACAATGATGATGTGCAAATGGCTGCTGCTGGTTTACTAGCCAACCTTCCAAAATCAGAACGGGAACTCACTATGGAGTTGATTGACCTGGGAGGCCTTGATGCAATCCTAAGCATTTTAAAAAATGGTACAATGGAAGCAAAAGAAAATGCTCTCAGTGCCCTCTTCAGATTCACAGACCCCACAAATATCGAGTCACAGCATGATTTGGTTAAACGAGGACTATATCCTTTGCTTGTAAATTTTCTCAACACGGGTTCAGTAACAGCAAAGGCAAGAGCAGCAGCATTCATTGGTGATCTTTCTATGAGCACTCCAAAGCTCACAGCTGTTTCCAAATCAACCGGTTGCACTCGTTGGTGGTGTTTTAGACCATCGAAAGTCCCTTTATGTTCAGCACATGGGAGTGTATGCAGTGTGAGTTCCACATTTTGTCTGTTGGAAGCAAATGCTTTGCCCGGCTTGATAAGGCTGTTACATGGGGAGGTTCATGCAACTGCTTATGAAGCTATACAGACTCTTTCCACATTGGTTTTGGAAGACTTTCCCCAAAGGGGAGCTCGTGTGTTGCATGAGTCAAATGCAATGAGACCCTTATTGGAAATTTTGAATTGGGGAACTGATTCTCTCAAATCAGAAGCTATAGGACTCTTGGAGAAGGTGTTTGTGTCAAAGGAAATGGTCGAATACTATGGAACAAGGGCTAGGTTAAGTCTACTTGGTCTGACTGGCATCACTGTATATGGGGATGGCCACCTAAGGAGAAAGGCTGCCAGGGTACTGTCATTGCTTGAACGCTATTCAAAGTCGTCATCATCTGCATTCTCTGGAGTTCAGGAGTGA 3180 0.4164 MLENIGSFLERKREKQFSGVGFNFQPLGNTHSGLIRNSVHTMVGLELIPIGTILTVLNSQIVKTANAAIDVVIDKESFKVLSKHLLDIAPVLKELQLQELNESEAARVALESLESDIKKANNLVEKYRNRGRFYLLLRCRYIVKEVEQVTRDIGRSLAALSIANTEVLSRISDQVNRLQSEMQTVEFEASQSQLQIVDKLNHGIREQKLDQAFANDVLEEIGRAVGVPVEPSEVSKELASIRKEMEEAATRKERAEFIFLEQIIELLSRADAARDYEEVKKQYFRRVQVIERYDSREKYIRPLNSFLCPITGAVMVDPVSLCTGTTCERSAIEAWFDDGNRIDPETKEVLEDTTLRSNVRLRESIEEWREVNYCFGIRSIKESLLSNSDLLVQESLSQIQALIRENSINKDWISIGELTDIIISILGESDSTDAKMKILITLKDSVQGHARNKEKVVESQGWYHIISCLGSDSRISKEAIDLLYELLQNRSGWNKSFCKKLSDHPSAVSYLVTLLKGPVSNSAGVSEKILMELSEIDEENISAAAKFGWYKPLTDRMIQGSESSRMSMARAIVNLELKDLNLKLLGEQGVILPLLEMLSGSIESKELSLSSLVKLAKLHANKGIIAASGGVPLVLDLMFFCRMRPFITIKCCEILEKLASDDDGIDFLVDGKGNQLELENIITNLLALTQGPNSAHYRKPALRALLGICKFETGLVKKAVLAANGISLILPILDDSDSEIRETAINILFLFSQHEPQGLVEYLFSPRRLQALVGFLENDDNDDVQMAAAGLLANLPKSERELTMELIDLGGLDAILSILKNGTMEAKENALSALFRFTDPTNIESQHDLVKRGLYPLLVNFLNTGSVTAKARAAAFIGDLSMSTPKLTAVSKSTGCTRWWCFRPSKVPLCSAHGSVCSVSSTFCLLEANALPGLIRLLHGEVHATAYEAIQTLSTLVLEDFPQRGARVLHESNAMRPLLEILNWGTDSLKSEAIGLLEKVFVSKEMVEYYGTRARLSLLGLTGITVYGDGHLRRKAARVLSLLERYSKSSSSAFSGVQE* 1060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0015 1059 SUPERFAMILY ARM repeat 379 756 IPR016024 -
Gso2g0015 1059 CDD RING-Ubox_PUB 306 348 IPR045210 -
Gso2g0015 1059 SMART Ubox_2 305 368 IPR003613 GO:0004842|GO:0016567
Gso2g0015 1059 Gene3D - 579 896 IPR011989 -
Gso2g0015 1059 Pfam U-box domain 305 370 IPR003613 GO:0004842|GO:0016567
Gso2g0015 1059 ProSiteProfiles U-box domain profile. 301 375 IPR003613 GO:0004842|GO:0016567
Gso2g0015 1059 Gene3D - 49 164 IPR036537 GO:0007166
Gso2g0015 1059 Coils Coil 103 130 - -
Gso2g0015 1059 Gene3D - 904 1054 IPR011989 -
Gso2g0015 1059 Gene3D - 377 578 IPR011989 -
Gso2g0015 1059 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 767 795 IPR000225 GO:0005515
Gso2g0015 1059 Coils Coil 168 188 - -
Gso2g0015 1059 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 374 IPR013083 -
Gso2g0015 1059 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 47 1055 - -
Gso2g0015 1059 SUPERFAMILY ARM repeat 678 1047 IPR016024 -
Gso2g0015 1059 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 47 1055 - -
Gso2g0015 1059 SUPERFAMILY RING/U-box 288 372 - -
Gso2g0015 1059 SMART arm_5 842 882 IPR000225 GO:0005515
Gso2g0015 1059 SMART arm_5 799 839 IPR000225 GO:0005515
Gso2g0015 1059 SMART arm_5 449 488 IPR000225 GO:0005515
Gso2g0015 1059 SMART arm_5 962 1002 IPR000225 GO:0005515
Gso2g0015 1059 SMART arm_5 618 660 IPR000225 GO:0005515
Gso2g0015 1059 SMART arm_5 713 753 IPR000225 GO:0005515
Gso2g0015 1059 SMART arm_5 918 958 IPR000225 GO:0005515
Gso2g0015 1059 SMART arm_5 756 797 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0015 Gso-Chr2 166111 172096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0015 305 1057 U-box Gene Family AT1G76390 27.556 2.90e-42 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0015 - - gmx:100816935 2003.79