Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0011 ATGGAAACAGCGCTCACTTGCTTCTTCTGTGGTAGACTCCCTCCTGCAACTGCAAGTAGTCAGCACTTCCGTTGTAGTAATGCTTCCGCCTCCGGACTCGTGCGTTTCTCTTTGCCTCCTTCATTTAGGCTGATTCGAAACGCCACTAACACCAGTGAAACTAATGTCAAAAGTAGAAGAAGGAGAAGAAGAACTTGTCCACCTCTGGAGGTGGAGGAGGGTATTCTTCATCAGAACGGAGACCCTTTCGGGAAGAAGGATCTCGGGAAGAGTGTGATGAGTTGGATTCGTGATAGCATGAGGGCCATGGCGTCTGATTTAGCTGCTGCGGAATTAGAGGGAGGAGAGGGAGAGTTTGAGTTGTGGGAGCGCATGGGTCCGGGTCTCACTTTTATTATGCTGGCACAGCCATATCTCAATGCTGTTCCTATGCCCATTGGCCTCGAGGGTCTCTGCTTGAAGGTCTGCACTCACTATCCCACTCTTTTCGACCATTTTCAGAGGGAGCTTCGCCAAGTTCTCCGAGACTCCTTCATTCAGGACTGGCGGGACACCAAGTCTTGGAAACTGCTTAAGGACCTCGCTAATTCGGCTCAGCATAGGGCGGTTGTAAGAAAGATAACACAACCCAAGAGTGTCCAAGGCGTTTTAGGAATGGACTTTGAAAAGGTCAAAACAATACAGCACAGGATTGATGAATTCACCTCCCACATGTCAGAACTACTCCGTATTGAAAGGGATGCTGAATTGGAGTTTACTCAGGAGGAATTGGATGCTGTTCCTAAACCAGATGATACTTCTGATTCTTCAAAACCGATTGATTTCTTGGTTAGCCATAGCCAGCCTCAACAAGAACTCTGCGACACCATTTGTAATTTAAACGCCATCAGTACCTCTAGAGGGCTTGGGGGAATGCATTTGGTGTTATTCAAGGTTGAAGGGAACCACCGGTTACCACCTACCGCTCTTTCACCTGGAGACATGGTTTGTGTGAGAACATATGACAGCACAGGTGCAATTACAACTTCTTGCATACAAGGATTTGTGAACAGTTTTGGCGATGATGGCTATAGTATTACAGTTGCTTTAGAGTCACGCCATGGTGATCCTACATTCTCTAAACTATTTGGGAAGAGTGTGCGCATTGACCGTATTCAAGGACTGGCTGATACACTTACCTATGAGCGCAACTGTGAAGCTTTAATGCTGCTCCAGAAGAATGGTTTAAGAAAGAAGAATCCTTCTATTTCTGTTGTTGCTACACTGTTTGGAGATGGGGAAGATGTTGCATGGCTTGAGAAAAATCAATTGGTTGACTGGGCAGAAGAAAATTTGGATGCAAGATTAGGAAATGAAACCTTTGATGATTCTCAGCAGAGAGCAATTGCAATGGGTTTGAATAAAAAGAGACCTGTATTGGTTATCCAAGGCCCTCCTGGTACAGGCAAGACTGGTTTGCTCAAGCAACTTATAGTATGTGCTGTTCAGCAAGGTGAAAGGGTTCTTGTTACAGCACCTACTAATGCAGCTGTTGATAACATGGTTGAAAAGCTTTCAAATGTTGGATTAAATATTGTGCGGGTTGGAAATCCAGCTCGTATATCAAAAACAGTGGGATCAAAGTCTTTGGAAGAAATTGTAAATGCTAAGCTTGCAAGTTTTCGAGAAGAGTATGAGAGGAAGAAGTCAGATCTAAGAAAAGATCTAAGACATTGCTTAAAGGATGATTCACTAGCTTCAGGCATACGCCAACTTCTGAAGCAGCTGGGAAGGTCACTGAAGAAAAAGGAAAAGCAGACCGTAGTTGAAGTTCTATCTAGTGCTCAGGTTGTGCTTGCCACTAATACTGGAGCAGCTGACCCTTTGATTCGAAGGCTAGATACTTTTGACTTGGTTGTCATAGATGAAGCTGGACAGGCAATTGAACCCTCTTGCTGGATTCCTATATTGCAGGGAAAGCGCTGTATTCTTGCTGGTGATCAATGCCAACTTGCTCCTGTCATATTATCTAGAAAGGCCTTAGAAGGTGGTCTAGGAATATCTCTACTGGAGAGAGCTGCAACTTTGCATGAAGGGATTCTCACCACTAGGTTAACAACACAATACCGTATGAATGATGCAATTGCTAGTTGGGCTTCAAAGGAGATGTACGGAGGATTATTGAAGTCCTCTGAGACTGTCTTTTCTCATCTTCTAGTGAACTCTCCTTTTGTTAAGCCTACTTGGATAACACAATGCCCACTGCTATTGCTAGATACTAGAATGCCATATGGAAGTCTGTCAGTTGGTTGCGAAGAGCATCTAGACCCGGCTGGAACAGGCTCACTTTATAACGAAGGAGAAGCTGAGATAGTTTTGCAGCATGTATTTTCCTTAATCTATGCTGGTGTTAGCCCAACTGCTATTGCAGTGCAATCCCCTTATGTTGCTCAAGTACAACTTTTGAGGGACAAGCTTGATGAATTTCCAGAAGCAGCAGGTACTGAGGTTGCGACCATTGACAGTTTTCAAGGTCGGGAAGCTGATGCAGTAATTTTATCCATGGTACGATCAAACACATTGGGAGCTGTTGGATTCCTCGGGGATAGCAGAAGAATCAATGTTGCCATCACAAGAGCACGCAAACATTTAGCTTTGGTCTGTGACAGCTCGACTATATGCCACAATACCTTCTTAGCAAGGCTTCTGCGTCATATTAGACACTTTGGTAGGGTGAAGCATGCAGAACCAGGTAGTTTTGGAGGATATGGACTTGGGATGAATCCAATATTACCTTCCATTAATTAG 2787 0.4438 METALTCFFCGRLPPATASSQHFRCSNASASGLVRFSLPPSFRLIRNATNTSETNVKSRRRRRRTCPPLEVEEGILHQNGDPFGKKDLGKSVMSWIRDSMRAMASDLAAAELEGGEGEFELWERMGPGLTFIMLAQPYLNAVPMPIGLEGLCLKVCTHYPTLFDHFQRELRQVLRDSFIQDWRDTKSWKLLKDLANSAQHRAVVRKITQPKSVQGVLGMDFEKVKTIQHRIDEFTSHMSELLRIERDAELEFTQEELDAVPKPDDTSDSSKPIDFLVSHSQPQQELCDTICNLNAISTSRGLGGMHLVLFKVEGNHRLPPTALSPGDMVCVRTYDSTGAITTSCIQGFVNSFGDDGYSITVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLRKKNPSISVVATLFGDGEDVAWLEKNQLVDWAEENLDARLGNETFDDSQQRAIAMGLNKKRPVLVIQGPPGTGKTGLLKQLIVCAVQQGERVLVTAPTNAAVDNMVEKLSNVGLNIVRVGNPARISKTVGSKSLEEIVNAKLASFREEYERKKSDLRKDLRHCLKDDSLASGIRQLLKQLGRSLKKKEKQTVVEVLSSAQVVLATNTGAADPLIRRLDTFDLVVIDEAGQAIEPSCWIPILQGKRCILAGDQCQLAPVILSRKALEGGLGISLLERAATLHEGILTTRLTTQYRMNDAIASWASKEMYGGLLKSSETVFSHLLVNSPFVKPTWITQCPLLLLDTRMPYGSLSVGCEEHLDPAGTGSLYNEGEAEIVLQHVFSLIYAGVSPTAIAVQSPYVAQVQLLRDKLDEFPEAAGTEVATIDSFQGREADAVILSMVRSNTLGAVGFLGDSRRINVAITRARKHLALVCDSSTICHNTFLARLLRHIRHFGRVKHAEPGSFGGYGLGMNPILPSIN* 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0011 928 Pfam AAA domain 680 883 IPR041679 -
Gso2g0011 928 Gene3D - 257 388 - -
Gso2g0011 928 SMART AAA_5 469 684 IPR003593 -
Gso2g0011 928 Pfam AAA domain 454 670 IPR041677 GO:0004386
Gso2g0011 928 CDD DEXXQc_SMUBP2 454 703 - -
Gso2g0011 928 SMART ultradead3 450 702 IPR014001 -
Gso2g0011 928 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 54 928 - -
Gso2g0011 928 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 452 890 IPR027417 -
Gso2g0011 928 Gene3D - 238 686 IPR027417 -
Gso2g0011 928 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 54 928 - -
Gso2g0011 928 CDD SF1_C_Upf1 704 900 IPR041679 -
Gso2g0011 928 Coils Coil 555 575 - -
Gso2g0011 928 Gene3D - 702 910 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0011 Gso-Chr2 126604 139758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0011 440 643 Core DNA Replication Machinery Family AT1G08840 25.728 2.87e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0011 - - gmx:100816409 1825.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0011 2 126604 139758 Gso10g0002 10 21131 31701 GST