Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0005 ATGGAAAGCAGAGTGGTATTTGAGAATGATTTGAATCTCAAGGCAACAGAGCTAAGATTGGGGTTGCCAGGGACGGAGGACAAAACCGTGCATGCTATTAGTATTAGAAACAACAAAAGGCAAGTGCCTGAAACTTCTCAAGAGTCTGTTTCCATTTCCAAGGCCTCACCTGACCAGCATGTGGAGAGTGATCCAGCCCCTCCAGCCAAGGCAAAGATAGTGGGGTGGCCACCAATCAGATCTTACAGGAAACAAAGCCTGCAGGAGGGTGATCAGGGGGATGGGATCTATGTGAAAGTGATCATGGATGGAGCACCTTACCTCAGAAAGATTGACTTGAAAGTCTATAGGGGCTATCCTGAACTACTCAAAGCTTTAGAAACCATGTTCAAGTTGACCATAGGTGAGTACTCTGAAAGAGAGGGTTACAAGGGTTCTGAATATGCACCTACATATGAAGACAAAGATGGTGACTGGATGCTAGTTGGAGATGTTCCATGGGACATGTTTATGACTTCCTGCAAAAGGCTAAGAGTCATGAAAGGCTCAGAAGCTAGAGGGTTGGGTTGTGGTGTGTGA 579 0.4594 MESRVVFENDLNLKATELRLGLPGTEDKTVHAISIRNNKRQVPETSQESVSISKASPDQHVESDPAPPAKAKIVGWPPIRSYRKQSLQEGDQGDGIYVKVIMDGAPYLRKIDLKVYRGYPELLKALETMFKLTIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFMTSCKRLRVMKGSEARGLGCGV* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0005 192 Gene3D - 90 192 - -
Gso2g0005 192 MobiDBLite consensus disorder prediction 38 70 - -
Gso2g0005 192 Pfam AUX/IAA family 38 189 IPR033389 -
Gso2g0005 192 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 189 IPR003311 GO:0005634|GO:0006355
Gso2g0005 192 ProSiteProfiles PB1 domain profile. 95 182 IPR000270 GO:0005515
Gso2g0005 192 PANTHER AUXIN-INDUCED PROTEIN 1 189 - -
Gso2g0005 192 MobiDBLite consensus disorder prediction 38 58 - -
Gso2g0005 192 SUPERFAMILY CAD & PB1 domains 89 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0005 Gso-Chr2 66575 68465 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0005 98 188 B3 DNA Binding Superfamily AT2G46530 37.363 6.24e-12 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gso2g0005 AUX_IAA 5.7e-51 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0005 K14484 - gmx:100800212 393.275