Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0004 ATGACAACAAGTTCCCTCAAAACAATGCATCAGTTCTTCTCTGCTGTCTTCCTCTTCCTCCTCCTTCCACTTTGCAGCAACGCTCAAACAGCACGACAAGCGAACAACACGGGCTTCACGTGCAACTTCACACGCACGTGCACGTCCTACGCCTTCTACCGGGCCACCGCCCCCAACTTCACCGACCTGGCCTCCATCGGCGACCTCTTCTCGGTGAGCCGCCTCATGATATCAACCCCATCCAACATCTCCTCTTCTTCCCTCAACACCCCTTTACTCCCAAATACACCCCTCTTCGTCCCCTTAACCTGCTCCTGCAACCCCGTCAACGCCTCCTTCGGCTCCCTCTCCTACGCCAACATCTCCTACACCATCAACCCCGGCGACACCTTCTTCTTAGTCTCCACCATCAAGTTCCAGAACCTCACCACTTTCCCCTCCGTTGAAGTCGTCAACCCCACCCTCCTCGCCACCAACCTCTCCATCGGCCAGGACACCATCTTCCCCATCTTCTGCAAATGCCCCCCCAACAGCCAAGGAACAAATTACATGATCTCCTACGTCGTCCAACCCGAGGATAACATGTCGTCAATAGCTTCAACTTTCGGTGCTGAAGAACAGTCCATCATTGACGCCAACGGCGGTGAGACAACTCTACATGACTATGACACCATTTTCGTGCCCGTGGCGCGGCTGCCGGCTCTGTCGCAGCCCGCGGTGGTTCCTCCCGCGCCGCCGCCAGTAATTGGGAGCAATAATGATGATAGGACAGGGACTGTTAGAGGGTTGGGGGTTGGATTGGGGATTGTGGGGTTGTTGTTGATTTTGGTGAGTGGGGTTTGGGTGTACAGAGAGGTTGTTGTGATGAAGGGAGTGGTGAGAGATGATGAGGAGAAGAATGTGTATTTGGGAGGGAAAGCGGAGGGTAAGAATTTGGATGTCAAGTTGATGGCTAATGTGTCTGATTGTTTGGATAAGTATAGGGTTTTTGGGATTGATGAGCTGGTGGAGGCCACTGATGGGTTTGATCAGAGTTGCTTGATTCAGGGGTCGGTGTACAAAGGCGAAATTGATGGGCATGTCTTTGCCATCAAGAAGATGAAGTGGAATGCCTATGAGGAACTCAAGATCTTGCAGAAGGTAAACCATGGGAATCTAGTGAAGTTGGAGGGATTTTGCATAGACCCAGAAGAAGCAAATTGCTATCTAGTCTATGAATATGTAGAGAATGGATCTCTATACTCATGGCTGCATGAGGGCAAAAAAGAAAAGTTGAGCTGGAAAATAAGGCTAAGAATAGCCATTGACATTGCCAATGGTCTCCAATACATCCACGAGCACACAAGGCCACGGGTTGTGCACAAAGACATCAAGAGCAGCAACATTCTCTTGGACTCCAACATGAGAGCCAAAATTGCCAATTTTGGGCTTGCAAAGTCTGGAATGAATGCCATTACCATGCACATTGTGGGAACACAGGGCTATATTGCCCCTGAATATCTTGCTGATGGTGTGGTCTCTACAAAGATGGATGTGTTCGCATTTGGGGTTGTGTTGCTTGAATTAATTTCTGGGAAGGAAGTCATTAACGAGGAGGGAAATCTCTTGTGGGCAAGTGCCATCAAAACCTTTGAAGTGGACAATGAGCAAGAGAAGACAAGGAGGCTGAAGGAATGGTTGGACAAGGATATTTTAAGGGAGACATTCTCAATGGAAAGTTTGATGGGTGCTCTCACCGTTGCAATTGCTTGCTTGCATAGAGACCCGTCTAAGAGGCCCAGCATAATGGATATCGTCTATGCACTGAGTAAAAGTGAAGATATGGGCTTTGATATTTCCGATGATGGGATTGGTTCCCCACGGGTGATAGCTAGGTGA 1878 0.4931 MTTSSLKTMHQFFSAVFLFLLLPLCSNAQTARQANNTGFTCNFTRTCTSYAFYRATAPNFTDLASIGDLFSVSRLMISTPSNISSSSLNTPLLPNTPLFVPLTCSCNPVNASFGSLSYANISYTINPGDTFFLVSTIKFQNLTTFPSVEVVNPTLLATNLSIGQDTIFPIFCKCPPNSQGTNYMISYVVQPEDNMSSIASTFGAEEQSIIDANGGETTLHDYDTIFVPVARLPALSQPAVVPPAPPPVIGSNNDDRTGTVRGLGVGLGIVGLLLILVSGVWVYREVVVMKGVVRDDEEKNVYLGGKAEGKNLDVKLMANVSDCLDKYRVFGIDELVEATDGFDQSCLIQGSVYKGEIDGHVFAIKKMKWNAYEELKILQKVNHGNLVKLEGFCIDPEEANCYLVYEYVENGSLYSWLHEGKKEKLSWKIRLRIAIDIANGLQYIHEHTRPRVVHKDIKSSNILLDSNMRAKIANFGLAKSGMNAITMHIVGTQGYIAPEYLADGVVSTKMDVFAFGVVLLELISGKEVINEEGNLLWASAIKTFEVDNEQEKTRRLKEWLDKDILRETFSMESLMGALTVAIACLHRDPSKRPSIMDIVYALSKSEDMGFDISDDGIGSPRVIAR* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0004 625 Gene3D Transferase(Phosphotransferase) domain 1 408 614 - -
Gso2g0004 625 PANTHER - 12 623 - -
Gso2g0004 625 Pfam LysM domain 187 227 IPR018392 -
Gso2g0004 625 SUPERFAMILY LysM domain 185 228 IPR036779 -
Gso2g0004 625 Gene3D LysM domain 184 228 IPR036779 -
Gso2g0004 625 Gene3D Phosphorylase Kinase; domain 1 311 407 - -
Gso2g0004 625 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 12 623 - -
Gso2g0004 625 Pfam Protein kinase domain 363 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso2g0004 625 ProSiteProfiles Protein kinase domain profile. 324 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso2g0004 625 SMART serkin_6 342 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso2g0004 625 SUPERFAMILY Protein kinase-like (PK-like) 327 602 IPR011009 -
Gso2g0004 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 452 464 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0004 Gso-Chr2 50141 54251 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0004 9 604 Receptor kinase-like Gene Family AT2G23770 33.858 1.34e-83 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Gso2g0004 Pkinase 7.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0004 - - gmx:100802872 1155.58