Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g2043 ATGGCTTTAGAGCAGGAGGTGGGTCAGAATAGGAACACAAACGGCGTGGATGGTGGAGACGAGGGAGGGAAAGCGCCGAGACTGCCTCGGTGGACAAGACAAGAAATTCTGGTTCTGATACAGGGAAAGAGAGACGCCGAGAACAAGTTCAGGAGGGGGCGCACCGCGGGTTTGGCATTTGGGTCGGGTCAGGTCGAGCCGAAATGGGCATCGGTATCTTCCTACTGCAGAAAGCATGGAGTGAACAGAGGTCCGGTTCAGTGCCGGAAAAGGTGGAGTAATTTGGCCGGAGACTACAAGAAGATCAAGGAATGGGAGTCTCAGATAAGGGATGAGACGGAGTCGTTTTGGGTCATGAGAAACGATTTAAGGAGAGAGAGGAAATTGGCCGGATTTTTCGATAAGGAGGTCTATGATATTCTTGATTCAGGCTCAGGCCCAACGACCTTGGCTCTTTCTCTTTCCTCATCGCCTCCACCAACCACAACCATAACAACAACAACAGTCCCTGACGACCCTCCTCACCTCTATGATAGTAACCGGAGCGCGCCCGGTGAGGATGGCTTGTTCTCAGATTTTGAACAAGATGAAGAGAAGAACCCGCCCTCCAACAAGGACATTCCTGCTCCCATTCCTATCTCAGAGAAGCAATATCTCCGTCGTTGCCAAGCTGAAGGTGTGACTAACGAGAAACTGTCTACTTCAAATCCAGAAATGGGTTCTACTTCTCAAGGAGAGCGGAAAAGGAAGCGGTTAACAACTGATGGAGAAGAGGAAACTTTGCAATATCAATTAATTGATGTCTTAGAAAGAAATGGCAAGATGCTAAGTGCTCAACTTGAAGCGCAGAATATAAATTTCCAGTTGGATCGTGAGCAGCGGAAAGACCATGCAAGTAATTTGGTTGCTGTGCTTGATAAGCTTGCAGATGCTCTAGGGAAAATCGCTGATAAATTATAG 960 0.4823 MALEQEVGQNRNTNGVDGGDEGGKAPRLPRWTRQEILVLIQGKRDAENKFRRGRTAGLAFGSGQVEPKWASVSSYCRKHGVNRGPVQCRKRWSNLAGDYKKIKEWESQIRDETESFWVMRNDLRRERKLAGFFDKEVYDILDSGSGPTTLALSLSSSPPPTTTITTTTVPDDPPHLYDSNRSAPGEDGLFSDFEQDEEKNPPSNKDIPAPIPISEKQYLRRCQAEGVTNEKLSTSNPEMGSTSQGERKRKRLTTDGEEETLQYQLIDVLERNGKMLSAQLEAQNINFQLDREQRKDHASNLVAVLDKLADALGKIADKL* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g2043 319 MobiDBLite consensus disorder prediction 227 242 - -
Gso20g2043 319 ProSiteProfiles Myb-like domain profile. 30 96 IPR001005 -
Gso20g2043 319 Gene3D - 31 101 - -
Gso20g2043 319 MobiDBLite consensus disorder prediction 226 256 - -
Gso20g2043 319 CDD GT1 29 103 - -
Gso20g2043 319 Pfam Myb/SANT-like DNA-binding domain 30 119 IPR044822 -
Gso20g2043 319 MobiDBLite consensus disorder prediction 1 16 - -
Gso20g2043 319 MobiDBLite consensus disorder prediction 151 211 - -
Gso20g2043 319 MobiDBLite consensus disorder prediction 151 173 - -
Gso20g2043 319 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASR3 8 319 - -
Gso20g2043 319 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASR3 8 319 - -
Gso20g2043 319 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g2043 Gso-Chr20 50932464 50936347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g2043 18 127 Trihelix Transcription Factor Family AT1G13450 32.143 3.56e-07 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gso20g2043 Myb_DNA-bind_4 1.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g2043 - - gmx:100779050 590.112