Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g2040 ATGGGTTGTTTTTCGTGCTTCGATTCGCGGGAGGACGAGAAGCTGAATCCCAATCCTCAGCAGGAAAACCACCAGCATGAACATGAACATGAACATGATCTTAAGCCCCCTGTTCCTTCTCGTATATCCAGATTGCCGCCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCAGTAGGAGCAGACAAGCTACGCTCAACAACAAGTAATGGTAATGGAGAGTCCACTGCTGTTCAAATTGCGGCTCAAACATTCAGTTTCCGTGAGCTTGCAGCCGCAACGAAAAACTTCAGGCCCCAATCCTTTTTGGGTGAAGGTGGTTTTGGAAGGGTCTACAAGGGCCGCCTGGAAACCACCGGTCAGGTTGTGGCTGTTAAACAGTTAGACAGAAACGGTCTTCAGGGTAATCGGGAATTCCTCGTCGAGGTTCTCATGCTCAGTCTTCTACACCACCCTAATCTTGTCAATCTCATTGGATACTGTGCCGATGGGGACCAACGCCTCTTAGTTTATGAATTTATGCCTTTTGGATCTTTGGAGGACCACCTTCATGATCTTCCCCCGGACAAGGAACCATTAGATTGGAACACCAGGATGAAAATAGCTGCTGGGGCAGCAAAAGGATTGGAATACCTTCACGACAAAGCAAACCCTCCTGTCATTTATAGAGACTTCAAATCATCTAATATATTACTTGATGAAGGTTATCATCCAAAGCTTTCAGACTTTGGTCTTGCAAAGCTTGGTCCAGTTGGTGACAAATCACACGTTTCAACCCGTGTCATGGGAACTTATGGTTACTGTGCCCCAGAATATGCTATGACTGGACAGCTGACTGTGAAGTCTGATGTATATAGTTTTGGGGTAGTCTTCTTGGAGCTGATTACTGGCCGTAAAGCCATTGACAGCACTCGACCCCATGGAGAACAAAACCTTGTCACATGGGCACGTCCACTGTTCAGTGACCGCAGGAAGTTTCCAAAGTTAGCAGATCCACAGCTGCAGGGACGGTATCCCATGCGGGGTCTTTACCAAGCTCTAGCTGTGGCATCAATGTGCATTCAAGAACAGGCTGCAGCACGTCCACTCATTGGGGATGTGGTGACAGCCCTTTCTTTTCTGGCCAACCAGGCATATGACCATAGGGGAGCTGGTGATGATAAAAAGAACAGGGATGATAAAGGTGGAAGAATATTGAAAAATGATGTAGGTGGAGGATCTGGACGCAGATGGGATTTGGAAGGATCTGAGAAAGATGACTCCCCACGTGAAACTGCAAGGATGTTAAACAACAGGGATCTTGATAGAGAACGTGCCGTGGCTGAAGCCAAGATATGGGGAGAGAATTGGAGAGAAAAAAGACGACAAAGTGCGCAGGGCAGTTTTGATGGTTCTAACGCTTAG 1401 0.4768 MGCFSCFDSREDEKLNPNPQQENHQHEHEHEHDLKPPVPSRISRLPPSASASASASAVGADKLRSTTSNGNGESTAVQIAAQTFSFRELAAATKNFRPQSFLGEGGFGRVYKGRLETTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPFGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDFKSSNILLDEGYHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRKAIDSTRPHGEQNLVTWARPLFSDRRKFPKLADPQLQGRYPMRGLYQALAVASMCIQEQAAARPLIGDVVTALSFLANQAYDHRGAGDDKKNRDDKGGRILKNDVGGGSGRRWDLEGSEKDDSPRETARMLNNRDLDRERAVAEAKIWGENWREKRRQSAQGSFDGSNA* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g2040 466 MobiDBLite consensus disorder prediction 45 74 - -
Gso20g2040 466 MobiDBLite consensus disorder prediction 381 433 - -
Gso20g2040 466 MobiDBLite consensus disorder prediction 7 38 - -
Gso20g2040 466 Gene3D Transferase(Phosphotransferase) domain 1 173 394 - -
Gso20g2040 466 SUPERFAMILY Protein kinase-like (PK-like) 73 372 IPR011009 -
Gso20g2040 466 ProSitePatterns Protein kinases ATP-binding region signature. 102 125 IPR017441 GO:0005524
Gso20g2040 466 Gene3D Phosphorylase Kinase; domain 1 56 172 - -
Gso20g2040 466 Pfam Protein kinase domain 99 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g2040 466 MobiDBLite consensus disorder prediction 381 398 - -
Gso20g2040 466 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Gso20g2040 466 PANTHER OS07G0668900 PROTEIN 1 461 - -
Gso20g2040 466 ProSiteProfiles Protein kinase domain profile. 96 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g2040 466 MobiDBLite consensus disorder prediction 1 74 - -
Gso20g2040 466 CDD STKc_IRAK 102 370 - -
Gso20g2040 466 MobiDBLite consensus disorder prediction 410 433 - -
Gso20g2040 466 PANTHER SERINE/THREONINE-PROTEIN KINASE PBS1 1 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g2040 Gso-Chr20 50912471 50917601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g2040 1 454 Glycoside Hydrolase AT3G07070 57.143 1.59e-172 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Gso20g2040 Pkinase 4.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g2040 K13430 - gmx:100777987 878.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g2040 20 50912471 50917601 Gso10g2618 10 53103051 53106173 GST