Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g2038 ATGACCGTGACCATGGCGGCTGCGTTTACAAGTACAAGTGCAACACTGAGACTGTCAAATGTTGGAGAGAGCAGAGGTTTGCAGCTGCGTAAGTGTAACCCTAATCCTAATAAGCTGAAGGTTATGGGGGGGTTTGGAGGTTGTTCTGGAGTGGCAGTGGGTGTGAGAGAAAGAAAAGGAATTGGAAGGGTTAGGGTTCGGGTTCGGGCGAGTTCTTCGTCGGACGAGGCAGTGAGTGCGCAGTCAAAAGTGACTCAGAAAGTATTCTTTGACGTCAGTATTGGAAATCCAGTTGGGAAGCTTGTGGGACGTATTGTGATTGGACTGTACGGCGACGATGTCCCCCAAACGGCCGAGAACTTCCGTGCCCTTTGTACTGGAGAGAAGGGCTTTGGCTATAAGGGCTCCACCTTCCATCGTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTAATTTGTCTCACACTGGACCGGGTGTTGTTAGCATGGCAAATGCAGGACCCAACACAAATGGGAGTCAGTTTTTCATATGCACTGTCAAGACACCTTGGCTGGATCAGAGACATGTAGTATTTGGGCAAGTTTTGGAAGGCATGGATATTGTTAGGTTGATCGAATCACAGGAGACAGATAGGGGTGACCGTCCTACAAAGAAGGTGACCATCAGTGACTGTGGTGAGCTTCCAAATGCTTGA 762 0.4751 MTVTMAAAFTSTSATLRLSNVGESRGLQLRKCNPNPNKLKVMGGFGGCSGVAVGVRERKGIGRVRVRVRASSSSDEAVSAQSKVTQKVFFDVSIGNPVGKLVGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFNLSHTGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVRLIESQETDRGDRPTKKVTISDCGELPNA* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g2038 253 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP20-3, CHLOROPLASTIC 48 251 - -
Gso20g2038 253 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 99 249 IPR002130 GO:0000413|GO:0003755
Gso20g2038 253 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 48 251 - -
Gso20g2038 253 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 102 248 IPR002130 GO:0000413|GO:0003755
Gso20g2038 253 SUPERFAMILY Cyclophilin-like 80 250 IPR029000 -
Gso20g2038 253 MobiDBLite consensus disorder prediction 231 253 - -
Gso20g2038 253 CDD cyclophilin_ABH_like 87 248 - -
Gso20g2038 253 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 133 150 IPR020892 GO:0003755|GO:0006457
Gso20g2038 253 Gene3D - 72 253 IPR029000 -
Gso20g2038 253 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 109 124 IPR002130 GO:0000413|GO:0003755
Gso20g2038 253 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 138 150 IPR002130 GO:0000413|GO:0003755
Gso20g2038 253 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 181 196 IPR002130 GO:0000413|GO:0003755
Gso20g2038 253 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 196 208 IPR002130 GO:0000413|GO:0003755
Gso20g2038 253 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 209 224 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g2038 Gso-Chr20 50900250 50902874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g2038 103 244 U-box Gene Family AT5G67530 48.252 9.01e-35 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g2038 K03768 - gmx:100777088 454.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g2038 20 50900250 50902874 Gso10g2616 10 53091044 53093305 GST