Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g2029 ATGTATCCCTCTTCCTCTTCCTCCTCCTCCTCCTCTTCCTCTCAGTCCATGACCCAAGCTGGCCTCACTCGCTACGGTTCCGCCCCCGGTTCTCTTCTCACCAGCACGGTTGATTCTCTTATTGGTGGATCCCGTCCCAGTCCCTACTTTTCCGGAGAGTCTTCTGAGTCTCCCTGCAAAGAGCAAAGATCTTTCCACAACCACCCCCCCTCCTTCGCTTCCTCCTTGCTCCGCCAGAAAAGCTCTCCCGCCGGCTTCCTTTCCCATCTCTCCAATCACCATGGTGTGGGTTTCACCATCACCCCCGGTGGTTTATCAAATTCAAATTCAAATTCAAATTGTTCTCTCTTGAAGTCTCAACTCAGCTTCACCCACGAATCTCTTTCCAACACTGTTAATGTTGATCCCTCCAGCACCACCTTCGGAATGGATCCCTGGGACAACAATTCCATCGCCTTTTCTGCAACTTCAACCAAGCGCTCCAAAACCAACACCAATGATCCTGACATTTTACATTCCCTGAATTCGGCCTTGGAATCACAGTTCAATCTTCCACATACAAGTCTGGAAATGTCAACCGTGGACAAGCTATTGCACATTCCTGAAGATTCTGTCCCTTGTAAAATCCGTGCTAAGCGAGGTTGTGCTACTCATCCCCGTAGCATTGCCGAGCGGGAGAGAAGAACAAGGATCAGTGGCAAGCTCAAGAAATTACAGGACCTTGTACCCAATATGGATAAGCAAACAAGCTATGCAGACATGCTCGATTTGGCCGTTCAACACATTAAAGGTCTTCAAACTCAGGTTCAGAAGCTTCACAAAGAAATGGAGAATTGCACTTGCGGATGCAAACAAAGCAAATAA 864 0.4826 MYPSSSSSSSSSSSQSMTQAGLTRYGSAPGSLLTSTVDSLIGGSRPSPYFSGESSESPCKEQRSFHNHPPSFASSLLRQKSSPAGFLSHLSNHHGVGFTITPGGLSNSNSNSNCSLLKSQLSFTHESLSNTVNVDPSSTTFGMDPWDNNSIAFSATSTKRSKTNTNDPDILHSLNSALESQFNLPHTSLEMSTVDKLLHIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYADMLDLAVQHIKGLQTQVQKLHKEMENCTCGCKQSK* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g2029 287 Pfam Helix-loop-helix DNA-binding domain 220 266 IPR011598 GO:0046983
Gso20g2029 287 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 21 280 - -
Gso20g2029 287 PANTHER TRANSCRIPTION FACTOR BHLH129 21 280 - -
Gso20g2029 287 MobiDBLite consensus disorder prediction 1 58 - -
Gso20g2029 287 MobiDBLite consensus disorder prediction 1 74 - -
Gso20g2029 287 CDD bHLH_AtbHLH_like 220 272 IPR045239 -
Gso20g2029 287 Gene3D - 216 286 IPR036638 GO:0046983
Gso20g2029 287 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 218 280 IPR036638 GO:0046983
Gso20g2029 287 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 215 265 IPR011598 GO:0046983
Gso20g2029 287 SMART finulus 221 271 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g2029 Gso-Chr20 50829499 50831781 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g2029 76 285 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 54.468 4.07e-69 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso20g2029 HLH 4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g2029 - - gmx:100819319 548.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g2029 20 50829499 50831781 Gso10g2609 10 53013402 53014785 GST