Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g2025 ATGGATCGCAAGAGGGGAAGGCCTGAAGCTGCCTTCAATTTCAATGGCGGCGCCAAGAAATCGAGGCCTGAAACGGACTCCTTTCCAACTGGTTTAGGAAGCAAATCGAAGCCATGCACAAAGTTTTTCAGCACCTCCGGCTGTCCATTTGGTGAAGGATGCCACTTCCTGCATTATGTTCCTGGTGGCTTTAAAGCTGTCTCTCAACTGATCAATGTTGGTAGCAATCCTGTTACTCCTCAAGTTGGGAGAAACCCTGTTCCACCATCCTTCCCCGATGGATCTTCTCCTCCAGTTGTTAAAACCCGATTGTGCAACAAGTTTAATACAGCTGAAGGTTGCAAATTTGGTGACAAATGTCACTTTGCCCATGGTGAGTGGGAGCTTGGCAGGCCTACAGCCCCATCATATGAAGATCCCCGTGTTTTGGGACAAATGCCAAGCAGCAGGGTAGGTGGGCGAGTTGAGCCCCCACATCCAGCTCATGGAGCTGCTGCCAGCTTTGGAGCCTCGGCTACTGCAAAAATCAGTATCAATGCTTCCTTAGCTGGAGCTGTCATTGGAAAAAATGGTGTCAACTCGAAGCAAATATGTCGTGTAACAGGAGCTAAACTTTCCATAAGGGATCATGACACGGATCCTAACCTTAGAAACATCGAGCTTGAAGGCAGTTTTGATCAGATCAAACAAGCCAGTGCCATGGTTCACGAAGTTATTCTAAATGTTAGTTCTGCCTCTGGGCCTCCAATGAAAAGCTTTACTTCGCAGACTTCTGCCCCTACAAGCAACTTCAAGACTAAGCTGTGCGAAAACTTTGCCAAAGGTTCCTGCACTTTTGGGGAAAGGTGTCACTTCGCACATGGAACTGATGAATTGCGCAAGTCTGGAATGTGA 894 0.4776 MDRKRGRPEAAFNFNGGAKKSRPETDSFPTGLGSKSKPCTKFFSTSGCPFGEGCHFLHYVPGGFKAVSQLINVGSNPVTPQVGRNPVPPSFPDGSSPPVVKTRLCNKFNTAEGCKFGDKCHFAHGEWELGRPTAPSYEDPRVLGQMPSSRVGGRVEPPHPAHGAAASFGASATAKISINASLAGAVIGKNGVNSKQICRVTGAKLSIRDHDTDPNLRNIELEGSFDQIKQASAMVHEVILNVSSASGPPMKSFTSQTSAPTSNFKTKLCENFAKGSCTFGERCHFAHGTDELRKSGM* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g2025 297 SUPERFAMILY CCCH zinc finger 97 130 IPR036855 GO:0046872
Gso20g2025 297 Pfam KH domain 174 236 IPR004088 GO:0003723
Gso20g2025 297 SUPERFAMILY CCCH zinc finger 34 59 IPR036855 GO:0046872
Gso20g2025 297 Pfam RNA-binding, Nab2-type zinc finger 38 58 - -
Gso20g2025 297 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 264 288 IPR000571 GO:0046872
Gso20g2025 297 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 101 126 IPR000571 GO:0046872
Gso20g2025 297 Gene3D - 94 131 - -
Gso20g2025 297 Gene3D - 260 295 - -
Gso20g2025 297 Gene3D K Homology domain, type 1 167 259 IPR036612 GO:0003723
Gso20g2025 297 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 8 296 - -
Gso20g2025 297 MobiDBLite consensus disorder prediction 1 33 - -
Gso20g2025 297 ProSiteProfiles Zinc finger C3H1-type profile. 263 290 IPR000571 GO:0046872
Gso20g2025 297 ProSiteProfiles Type-1 KH domain profile. 171 235 - -
Gso20g2025 297 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14 8 296 - -
Gso20g2025 297 SMART kh_6 170 240 IPR004087 GO:0003676
Gso20g2025 297 SMART c3hfinal6 263 289 IPR000571 GO:0046872
Gso20g2025 297 SMART c3hfinal6 101 126 IPR000571 GO:0046872
Gso20g2025 297 SMART c3hfinal6 33 60 IPR000571 GO:0046872
Gso20g2025 297 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 162 241 IPR036612 GO:0003723
Gso20g2025 297 CDD KH-I 175 236 - -
Gso20g2025 297 ProSiteProfiles Zinc finger C3H1-type profile. 33 61 IPR000571 GO:0046872
Gso20g2025 297 SUPERFAMILY CCCH zinc finger 262 293 IPR036855 GO:0046872
Gso20g2025 297 ProSiteProfiles Zinc finger C3H1-type profile. 100 127 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g2025 Gso-Chr20 50776515 50781808 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso20g2025 KH_1 7e-11 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g2025 - - gmx:100818781 595.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g2025 20 50776515 50781808 Gso10g2604 10 52951337 52956130 GST