Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g2023 ATGATTGGAGTTGAGAAAGTGACAATTTGTATGAGAATAGAGGTTTTGGGTCTTTGGTATAGTTGGCAAATATCAGGAGTTCATGAAAGTTCAGATTGTAGCGAAATCAAATTTGCATTCGACGCAGTAGTAAAACGCGCGAGGCATGAAGAGAATAATGCAGCAGCACAGAAGTTCAAAGGCGTTGTGTCTCAACAAAATGGGAACTGGGGTGCACAGATATATGCACACCAGCAGAGAATCTGGTTGGGGACCTTCAAATCTGAAAGAGAGGCTGCAATGGCTTATGACAGCGCCAGCATAAAACTTAGAAGCGGAGAGTGCCACAGAAACTTTCCATGGAACGACCAAACAGTTCAAGAGCCTCAGTTCCAAAGCCATTACAGCGCAGAAACAGTGCTAAACATGATTAGAGATGGCACCTATCCATCAAAATTTGCTACATTTCTCAAAACTCGTCAAACCCAAAAAGGCGTTGCGAAACACATAGGTCTGAAGGGTGATGACGAGGAACAGTTTTGTTGCACCCAACTTTTTCAGAAGGAATTAACACCAAGTGATGTGGGCAAGCTCAACAGGCTTGTCATCCCAAAGAAGCATGCAGTTAGCTATTTTCCTTACGTTGGTGGCAGTGCTGATGAGAGTGGTAGTGTTGACGTGGAGGCTGTGTTTTATGACAAACTCATGCGATTGTGGAAGTTCCGATACTGCTATTGGAAGAGCAGCCAAAGTTACGTGTTCACCAGAGGCTGGAATCGGTTTGTGAAGGATAAGAAGTTAAAGGCTAAAGATGTCATTGCGTTTTTTACGTGGGGAAAAAGTGGAGGAGAGGGAGAAACTTTTGCATTGATCGATGTAATTTATAATAATAATGCAGAAGAAGACAGCAAGGGAGACACCAAACAAGTTTTGGGAAACCAATTACAATTAGCTGGCAGTGAAGAAGGTGAAGATGAAGATGGAAACATTGGAAAGGATTTCAATGCACAAAAGGGTCTGAGGCTCTTTGGTGTGTGTATCACCTGA 1026 0.4298 MIGVEKVTICMRIEVLGLWYSWQISGVHESSDCSEIKFAFDAVVKRARHEENNAAAQKFKGVVSQQNGNWGAQIYAHQQRIWLGTFKSEREAAMAYDSASIKLRSGECHRNFPWNDQTVQEPQFQSHYSAETVLNMIRDGTYPSKFATFLKTRQTQKGVAKHIGLKGDDEEQFCCTQLFQKELTPSDVGKLNRLVIPKKHAVSYFPYVGGSADESGSVDVEAVFYDKLMRLWKFRYCYWKSSQSYVFTRGWNRFVKDKKLKAKDVIAFFTWGKSGGEGETFALIDVIYNNNAEEDSKGDTKQVLGNQLQLAGSEEGEDEDGNIGKDFNAQKGLRLFGVCIT* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g2023 341 SMART rav1_2 58 119 IPR001471 GO:0003700|GO:0006355
Gso20g2023 341 CDD B3_DNA 178 277 IPR003340 GO:0003677
Gso20g2023 341 SUPERFAMILY DNA-binding domain 58 115 IPR016177 GO:0003677
Gso20g2023 341 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 28 309 - -
Gso20g2023 341 SMART B3_2 179 287 IPR003340 GO:0003677
Gso20g2023 341 Gene3D AP2/ERF domain 57 114 IPR036955 GO:0003700|GO:0006355
Gso20g2023 341 ProSiteProfiles B3 DNA-binding domain profile. 179 290 IPR003340 GO:0003677
Gso20g2023 341 Gene3D - 175 297 IPR015300 -
Gso20g2023 341 CDD AP2 57 115 IPR001471 GO:0003700|GO:0006355
Gso20g2023 341 Pfam B3 DNA binding domain 179 269 IPR003340 GO:0003677
Gso20g2023 341 SUPERFAMILY DNA-binding pseudobarrel domain 177 274 IPR015300 -
Gso20g2023 341 ProSiteProfiles AP2/ERF domain profile. 58 113 IPR001471 GO:0003700|GO:0006355
Gso20g2023 341 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 28 309 IPR044800 GO:0003700
Gso20g2023 341 Pfam AP2 domain 58 104 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g2023 Gso-Chr20 50765902 50769506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g2023 58 340 RAV Transcription Factor Family AT1G50680 53.526 1.28e-97 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gso20g2023 B3 1.8e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g2023 K09287 - gmx:102660503 701.049