Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g2017 ATGGCTGCAAAAACTGTTCTTGTTTGTGTTACCGTTATCCTTCTCCCCTTGCTGCAGCTTCCATATGTCTCAGCGACTAATGTTAGCATTGGTGAGACACTTGTTGCAGGTAACGGGGGTAAGCGATGGCTTTCTCCATCAGAGGACTTTGCATTTGGATTTCATCAGCTTGACAATGACCTTTACTTGCTTGCTATATCATACCAAAATATACCTCGTGACTCTTTCATTTGGTATGCAAACGGAGACAACCCTGCTCCTAAAGGATCAAAACTAGAGCTAAATCAATACACTGGACTAGTGCTCAAGAGCCCTCAAGGGGTTGAGCTATGGACATCACAGCTCATATCAGGTACAATTTCCTACGGACTAATGAATGATACGGGCAACTTCCAGCTTCTGGATGAGAATTCACAGGTGTTGTGGGACAGTTTCAGTAATCCAACTGATACCTTGGTGCCTACTCAAATCATGGAGGTAAAAGGCACGCTTTCATCTCGCCAGAAAGAGGCCAACTTCTCACGAGGAAGGTTTCAATTTCGCTTGCTTCCAGATGGTAATGCTGTGCTTAATCCTATAAATTTGCCTACCAATTATACTTATGATGCTCACTACATCAGTGCCACTTATGATTCGACCAACACAACAAACTCTGGTTTCCAAGTGATTTTTGATAATTCAGGCTTGTACATATTGAAGAGGAGCGGTGAGAAAGTTTATATTACAAATCCAAAAGATGCGCTCTCAACTGATTCCTATTATTATAGAGCAACCATCAATTTTGATGGAACTTTCACCATATCAAATTACCCTAAAAATCCAGCTTCAAATCCAAGCTGGACAGTTATGAAGACATTGCCAGACAACATTTGCATGAATTTGCTAGGAAACACGGGTGGTAGTGGGGTCTGTGGATTCAATAGTATCTGCACTCTCAAAGCTGACCAAAGACCAAAGTGCAGTTGCCCAGAAGGTTATTCTCCTCTTGATTCAAGGGATGAGTATGGCAGCTGCAAACCAAATTTGGAACTCGGTTGTGGATCAAGTGGACAAAGCTTGCAAGGAGATCTGTACTTCATGAAGGAAATGGCAAATACTGATTGGCCTGTATCAGATTATGAATTGTATAAACCTTACAATTCAGAAGACTGCAAGACTTCTTGCTTGCAAGATTGCTTATGTGCTGTTTCTATTTTTAGAGATGATAGCTGCTACAAGAAGAAGCTGCCTCTCTCAAACGGAAGACGGGATAGAGCAGTAGGGGCATCTGCTTTCATTAAGTTGATGAAAAATGGTGTTTCATTAAGTCCTCCAAATCCATTCATTGAAGAGAAGAAATATAAAAAAGATCAAGATACTTTGATAACTGTGATATCAGTCCTTTTGGGAGGTTCTGTCTTTTTCAATCTGGTCAGTGCTGTATGGGTTGGTTTCTACTTCTACTACAACAAAAAAAGTTCTACCAATAAAACTGCTACAGAAAGCAATTTGTGCAGTTTCACCTTTGCAGAGCTAGTGCAAGCAACAGATAACTTCAAAGAGGAATTGGGAAGGGGGTCTTGTGGCATTGTCTATAAAGGAACAACAAATTTGGCTACTATTGCAGTCAAGAAACTAGACAAGGTGCTCAAAGACTGCGATAAGGAATTCAAAACAGAAGTGAATGTGATAGGCCAAACTCATCACAAAAGCTTGGTTCGCCTGCTTGGATATTGTGATGAGGAACAACACCGGATTCTGGTGTATGAGTTCCTGAGCAATGGAACTTTAGCAAACTTCCTCTTTGGAGATTTCAAACCGAATTGGAACCAAAGAGTCCAGATTGCCTTTGGGATTGCAAGAGGGCTGGTCTACTTGCATGAGGAATGCTGCACCCAAATCATCCATTGTGACATAAAGCCACAAAATATACTACTTGATGAACAATACAATGCAAGAATTTCAGATTTTGGGTTGTCAAAGCTACTAAAGATTAATGAAAGCCACACAGAAACTGGCATTCGAGGAACAAAAGGGTATGTTGCGCCAGACTGGTTCAGGAGTGCACCAATCACTACCAAAGTTGATGTCTACAGTTTTGGTGTACTGCTTCTGGAGATCATTTGCTGCAGGAGAAATGTAGATGGTGAGGTTGGCAATGAAGAGAAGGCCATTTTAACTGATTGGGCTTATGACTGTTATAGGGCTGGAAGAATTGATATACTGCTTGAAAATGATGACGAGGCTATCGATGACACAAATAGGCTTGAAAGGTTTGTGATGGTAGCTATTTGGTGCCTTCAAGAGGATCCCTCTCTCAGGCCACCAATGAAGAAGGTGATGTTGATGCTGGAAGGAATAGCTCCAGTCACAATTCCACCAAGTCCCAGCCCTTATACCTCTGTGTCTGTTAGTTGTGGTTGA 2403 0.4153 MAAKTVLVCVTVILLPLLQLPYVSATNVSIGETLVAGNGGKRWLSPSEDFAFGFHQLDNDLYLLAISYQNIPRDSFIWYANGDNPAPKGSKLELNQYTGLVLKSPQGVELWTSQLISGTISYGLMNDTGNFQLLDENSQVLWDSFSNPTDTLVPTQIMEVKGTLSSRQKEANFSRGRFQFRLLPDGNAVLNPINLPTNYTYDAHYISATYDSTNTTNSGFQVIFDNSGLYILKRSGEKVYITNPKDALSTDSYYYRATINFDGTFTISNYPKNPASNPSWTVMKTLPDNICMNLLGNTGGSGVCGFNSICTLKADQRPKCSCPEGYSPLDSRDEYGSCKPNLELGCGSSGQSLQGDLYFMKEMANTDWPVSDYELYKPYNSEDCKTSCLQDCLCAVSIFRDDSCYKKKLPLSNGRRDRAVGASAFIKLMKNGVSLSPPNPFIEEKKYKKDQDTLITVISVLLGGSVFFNLVSAVWVGFYFYYNKKSSTNKTATESNLCSFTFAELVQATDNFKEELGRGSCGIVYKGTTNLATIAVKKLDKVLKDCDKEFKTEVNVIGQTHHKSLVRLLGYCDEEQHRILVYEFLSNGTLANFLFGDFKPNWNQRVQIAFGIARGLVYLHEECCTQIIHCDIKPQNILLDEQYNARISDFGLSKLLKINESHTETGIRGTKGYVAPDWFRSAPITTKVDVYSFGVLLLEIICCRRNVDGEVGNEEKAILTDWAYDCYRAGRIDILLENDDEAIDDTNRLERFVMVAIWCLQEDPSLRPPMKKVMLMLEGIAPVTIPPSPSPYTSVSVSCG* 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g2017 800 ProSiteProfiles Protein kinase domain profile. 510 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g2017 800 Gene3D - 148 290 - -
Gso20g2017 800 SMART blect_4 25 148 IPR001480 -
Gso20g2017 800 SUPERFAMILY Protein kinase-like (PK-like) 489 778 IPR011009 -
Gso20g2017 800 SMART serkin_6 510 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g2017 800 Gene3D Transferase(Phosphotransferase) domain 1 585 784 - -
Gso20g2017 800 Pfam D-mannose binding lectin 76 161 IPR001480 -
Gso20g2017 800 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 25 799 - -
Gso20g2017 800 ProSiteProfiles Bulb-type lectin domain profile. 19 146 IPR001480 -
Gso20g2017 800 Gene3D - 25 147 IPR036426 -
Gso20g2017 800 PIRSF SRK 1 799 IPR024171 GO:0004674
Gso20g2017 800 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 191 IPR036426 -
Gso20g2017 800 Pfam Protein kinase domain 513 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g2017 800 Gene3D Phosphorylase Kinase; domain 1 477 584 - -
Gso20g2017 800 ProSitePatterns Serine/Threonine protein kinases active-site signature. 627 639 IPR008271 GO:0004672|GO:0006468
Gso20g2017 800 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 25 799 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g2017 Gso-Chr20 50738529 50742026 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g2017 496 779 Receptor kinase-like Gene Family AT1G60800 43.581 9.20e-71 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Gso20g2017 Pkinase 1.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g2017 - - gmx:100811299 1606.65